PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037369.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 232aa    MW: 25820.2 Da    PI: 4.8949
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037369.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-17125175255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr+++ +g+++AeIrdp   + k  r++lg+f t  +Aaka++ a+ kl+g
  HL.SW.v1.0.G037369.1 125 HYRGVRRRP-WGKFAAEIRDP---NhKGSRVWLGTFNTDMDAAKAYDCAAFKLRG 175
                           7********.**********9...7667**********88*************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.3E-31124184IPR001471AP2/ERF domain
SMARTSM003807.8E-35125189IPR001471AP2/ERF domain
PROSITE profilePS5103224.197125183IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22125184IPR016177DNA-binding domain
PfamPF008472.9E-12125175IPR001471AP2/ERF domain
PRINTSPR003674.1E-13126137IPR001471AP2/ERF domain
CDDcd000181.81E-22133183No hitNo description
PRINTSPR003674.1E-13165185IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MEASDEFLTL ELIRQYLLGD FTSTDDAFFT DVTTSEDYTP QFTTTISSSS SSYHFQPVKQ  60
EYSQSESESN SPISDNNPDQ FLDLIMVPKS ETGPHVNLAS SPESSKSSSQ KTTTVSAQDS  120
GERRHYRGVR RRPWGKFAAE IRDPNHKGSR VWLGTFNTDM DAAKAYDCAA FKLRGRKAIL  180
NFPLEAGLSD PPENTGRSRK KRKSGQDQEA PEPESFESGD QGCTWTKVFS E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-27124184161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010094792.13e-62ethylene-responsive transcription factor ERF107
TrEMBLA0A2P5F3P41e-95A0A2P5F3P4_TREOI; AP2/ERF transcription factor
STRINGXP_010094792.11e-61(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52573056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.16e-34ERF family protein