PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037388.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 365aa    MW: 42370.8 Da    PI: 8.9134
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037388.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.3e-1717104497
                           E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                    B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                           +++ +++lk++ l++p +f++++g+    +  + ++ + g +W++kl  + ++++++l++GW++F++  ++k g +++F++dg+sef  
  HL.SW.v1.0.G037388.1  17 KMIMEHTLKQNKLWIPDRFVRKCGET--LKESVFVKVSCGSKWKMKL--KYYDQKFWLEEGWSDFANYYNIKRGYMLMFRYDGNSEF-- 99 
                           56778999***************855..6667***************..999999****************************9999.. PP

                           EEEEE CS
                    B3  93 vvkvf 97 
                           +v ++
  HL.SW.v1.0.G037388.1 100 YVVIL 104
                           77665 PP
2B370.32.6e-22272355184
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkl 84 
                           ffkvl++++    +rl++p +fa+++     +s +++l+ ++grsW vk+++++++gr    l++GW++F+k+n+L++gD++vF l
  HL.SW.v1.0.G037388.1 272 FFKVLMQPSLVYDNRLSFPSTFAKKYIP--STSCDVSLKVLEGRSWCVKYKFENYGGRaaARLRTGWNKFAKDNNLEVGDVCVFVL 355
                           99**********************9953..45669*****************9999998999**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.4E-237105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-238106IPR015300DNA-binding pseudobarrel domain
CDDcd100173.11E-1713105No hitNo description
PROSITE profilePS5086313.26714107IPR003340B3 DNA binding domain
SMARTSM010192.3E-1115107IPR003340B3 DNA binding domain
PfamPF023623.2E-1418104IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.1E-24266357IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.63E-22267356IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.157272365IPR003340B3 DNA binding domain
SMARTSM010199.5E-18272365IPR003340B3 DNA binding domain
PfamPF023629.2E-20272355IPR003340B3 DNA binding domain
CDDcd100176.28E-23272355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MEENPKSSTN NNPHFYKMIM EHTLKQNKLW IPDRFVRKCG ETLKESVFVK VSCGSKWKMK  60
LKYYDQKFWL EEGWSDFANY YNIKRGYMLM FRYDGNSEFY VVILDITTVE IDYPSAPSPA  120
PLHFDAKRLL TPKKEVMDGD FDDSKKLLTP KKEVMDGDFV ENFDEFSPCN ETKMVLALPM  180
PCSQPIPMIM QTSHNDQFQL AIVPQPDEYI GQNPIRSQKI PQNSQSRMRE QIENSPRRGK  240
TSRIPEHVKQ LKGDEKLAAL QMASGFRSTR PFFKVLMQPS LVYDNRLSFP STFAKKYIPS  300
TSCDVSLKVL EGRSWCVKYK FENYGGRAAA RLRTGWNKFA KDNNLEVGDV CVFVLLEVIN  360
VVFEV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1324936525137B3 domain-containing transcription factor VRN1
4i1k_B2e-1324936525137B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-41B3 family protein