PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037389.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 233aa    MW: 26601.1 Da    PI: 5.4265
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037389.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.21.1e-11631491386
                           TT-EE--HHH.HTT.---..--SEEEEEETTS............-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3  13 sgrlvlpkkfaeeh.ggkkeesktltledesg............rsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                           + rl lp +fa ++ + ++    +++le + g            +sW+v ++   +++  + ++++GW  F+++n+Lk+gD+v + + +
  HL.SW.v1.0.G037389.1  63 RVRLNLPVNFAMDYlEFDPDD--KVVLEVSYGdgmnrrtwdvgyKSWDVDYKLemNNGVPSPTFQAGWAAFAQDNNLKVGDTVPLNFAK 149
                           56899******9999555544..5777777777799*8888888888888877656666669********************9887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-1220158IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.09551162IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-957148IPR015300DNA-binding pseudobarrel domain
CDDcd100172.09E-1460143No hitNo description
PfamPF023625.8E-864151IPR003340B3 DNA binding domain
PfamPF085836.2E-13185232IPR013892Cytochrome c oxidase biogenesis protein Cmc1-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MELMSEREEA VALHLTSDFH TTRPFFKVIM QPYYDQQMVE ESGTESDPKF SSFEVVSGLV  60
GFRVRLNLPV NFAMDYLEFD PDDKVVLEVS YGDGMNRRTW DVGYKSWDVD YKLEMNNGVP  120
SPTFQAGWAA FAQDNNLKVG DTVPLNFAKE HLKNEVAAIK ERGSSMGYLQ EARENHVKKK  180
VEEALRSKMK QKALKECDDY ALKYAECATG RTLSVVWQCR KQAKELNSCL HQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-