PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037390.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 183aa    MW: 20699.6 Da    PI: 5.9767
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037390.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.57.5e-1118941799
                          E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           +p +f++++g +   s  + ++ + g +W+++l  +kk++ ++l kGW++F k   +k+g ++  k+ g+sef   v +f+ 
  HL.SW.v1.0.G037390.1 18 LIPETFTRKYGDN--LSDSVFIKIPCGPKWKIEL--TKKDNNIWLDKGWSNFTKYYAIKDGFTMSVKYLGNSEF--SVLIFDP 94
                          69********988..7778***************..**********************************9999..9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.265295IPR003340B3 DNA binding domain
SMARTSM010190.0072795IPR003340B3 DNA binding domain
SuperFamilySSF1019364.9E-151595IPR015300DNA-binding pseudobarrel domain
PfamPF023622.1E-81893IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-151995IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-81993No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MNYIGIIAAN ILFIYTHLIP ETFTRKYGDN LSDSVFIKIP CGPKWKIELT KKDNNIWLDK  60
GWSNFTKYYA IKDGFTMSVK YLGNSEFSVL IFDPNLNEID YPSFPISLVG SNIDNEPKIP  120
NKEVVDEDSV EKSSIPFSRP RKKMRTTPTA NIQSNPPGQN LMGTQFEIPK VACYKTGEIE  180
DS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138144RPRKKMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.16e-19B3 family protein