PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037637.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 378aa    MW: 42646 Da    PI: 9.552
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037637.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.85.3e-182772147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                          rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  HL.SW.v1.0.G037637.1 27 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 72
                          899*****************************.***********996 PP
2Myb_DNA-binding605e-1979122146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  HL.SW.v1.0.G037637.1  79 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 122
                           679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.4132273IPR017930Myb domain
SMARTSM007178.4E-152675IPR001005SANT/Myb domain
SuperFamilySSF466891.46E-2926120IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.8E-272880IPR009057Homeodomain-like
CDDcd001671.86E-133071No hitNo description
PfamPF139213.0E-173090No hitNo description
PROSITE profilePS5129428.36674128IPR017930Myb domain
SMARTSM007172.4E-1678126IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2181127IPR009057Homeodomain-like
CDDcd001672.45E-790121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEDSSGQAEA AGSSSGAAAD DAKTCPRGHW RPAEDEKLRQ LVEQYGAQNW NSIAEKLQGR  60
SGKSCRLRWF NQLDPRINRR PFTEEEEERL LAAHRIHGNK WALIARLFPG RTDNAVKNHW  120
HVIMARKQRE QSKVCGKRTF QSDDDHRNHY LHHLFNNLES SEVSFSANNN ISRNHKQDID  180
VRDLNGYYFS LGNYNNSKLS RSSPPSTSIL ILDHHEYSSP SLPLSSSWNF ANSTRIIKPP  240
PPSSSSSKDF FKSCSNSYNY YRPMSTSSAS WYGSSSGPVP LSCKRVLPSP FDQNHQLRSD  300
NHHGQNKLLL LANNNNNDNY SSGLSNINVQ QRKLAKMRES AILKAGQNQD HHHHHHSMEA  360
KEGIPFIDFL GVGVSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-31271277107B-MYB
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00145DAPTransfer from AT1G17950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5DMI91e-125A0A2P5DMI9_PARAD; MYB transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.15e-62myb domain protein 52