PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G037676.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 299aa    MW: 33692.5 Da    PI: 7.6457
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G037676.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B339.31.2e-121572213395
                           -SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                    B3  33 sktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           + + +l  ++g+sW+v++++  ks +      l+ GWk F+ +n L++gD+++F+l+++ + e  ++
  HL.SW.v1.0.G037676.1 157 ECEASLWVSNGKSWSVYYKV--KSIGgytaAQLSHGWKAFALENSLEVGDICTFELMNNCGNEISFR 221
                           4467778889********55..333333457789**********************99877766655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508636.315130IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.5E-4540IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-16133224IPR015300DNA-binding pseudobarrel domain
CDDcd100171.60E-15138226No hitNo description
Gene3DG3DSA:2.40.330.101.2E-13139226IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.9E-4140228IPR003340B3 DNA binding domain
PfamPF023626.8E-11156220IPR003340B3 DNA binding domain
PROSITE profilePS5086311.476166228IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MGEYYSLSRG DLLVFRYENS QFNVTIFEKT TVEIEYPSNP NHFEKHVDTD EDDVSIEILD  60
SFSLYPKTRV KSQPHKKMRP SEVQSNLSHL RSKGSLSSRV ESGNIIGLST PRRYQKPSYV  120
YRNTSSLGRG NYFQSEYPSF TVIMKSSYTS GQRTFKECEA SLWVSNGKSW SVYYKVKSIG  180
GYTAAQLSHG WKAFALENSL EVGDICTFEL MNNCGNEISF RVSIVKGDDA DDDAHNYLDK  240
STKMTSEANT GNQGTNKRPL SSVVLTASEA ASHFFSKNPS FQVALLSDHV QGYKPYIPL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-07B3 family protein