PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G038008.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 194aa    MW: 21798.4 Da    PI: 9.8733
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G038008.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY971.3e-30114172159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK+vk++ +prsYYrC++++C+vkk+++r ++d ++v++tY g Hnh+
  HL.SW.v1.0.G038008.1 114 LDDGYRWRKYGQKTVKNNSHPRSYYRCSHHTCNVKKQIQRLSKDSRTVVTTYDGIHNHP 172
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-31101172IPR003657WRKY domain
SuperFamilySSF1182908.5E-27106173IPR003657WRKY domain
PROSITE profilePS5081128.725109174IPR003657WRKY domain
SMARTSM007746.7E-35114173IPR003657WRKY domain
PfamPF031061.5E-24115172IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MIPLLSGFPN TIPNPNPNPN PFPSTSSTVL LEDQSQLSSE VVLNWFGLLC GSTNIDNNYN  60
NHQKPLSSPN YNDQSVKGNG SEGEKINNKA KIGRKKKAAP QRIAFHTRSD DDVLDDGYRW  120
RKYGQKTVKN NSHPRSYYRC SHHTCNVKKQ IQRLSKDSRT VVTTYDGIHN HPCHKLLETL  180
GPLLNQLQFL STI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-23104171774Probable WRKY transcription factor 4
2lex_A1e-23104171774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015896460.16e-62probable WRKY transcription factor 24
SwissprotQ8VWQ43e-56WRK56_ARATH; Probable WRKY transcription factor 56
TrEMBLA0A2P5ATP48e-82A0A2P5ATP4_PARAD; WRKY domain containing protein
STRINGXP_010053205.12e-60(Eucalyptus grandis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64000.12e-58WRKY DNA-binding protein 56