PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G038119.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NAC

Protein Properties

Length: 154aa MW: 18239.7 Da PI: 9.669

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G038119.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.1	1.3e-56	17	146	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPtdeelv++yL+kk+++++++l +vik+vd+yk+ePwdL++ k+ +ee+ ewyfFs++dkky+tg+r+nrat +g+Wkat HL.SW.v1.0.G038119.1 17 VPPGFRFHPTDEELVDYYLRKKITSRRVDL-DVIKDVDLYKIEPWDLQElcKIGSEEQsEWYFFSHKDKKYPTGTRTNRATVAGFWKAT 104 69*************************9.99**********954555554445************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 g+dk+++s k+ l+g++ktLvfykgrap+g+k+dW+mheyrle HL.SW.v1.0.G038119.1 105 GRDKAIYS-KHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLE 146 ****.8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-58	6	150	IPR003441	NAC domain
PROSITE profile	PS51005	54.993	17	154	IPR003441	NAC domain
Pfam	PF02365	2.9E-29	18	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MNFRSQRLAI MNAFSHVPPG FRFHPTDEEL VDYYLRKKIT SRRVDLDVIK DVDLYKIEPW 60 DLQELCKIGS EEQSEWYFFS HKDKKYPTGT RTNRATVAGF WKATGRDKAI YSKHDLIGMR 120 KTLVFYKGRA PNGQKSDWIM HEYRLETNEN GTPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-50	1	145	1	140	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006421693.2	1e-102	NAC domain-containing protein 7
Swissprot	Q9FWX2	6e-97	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	A0A2H5PMR4	1e-101	A0A2H5PMR4_CITUN; Uncharacterized protein
TrEMBL	V4RL72	1e-102	V4RL72_9ROSI; Uncharacterized protein (Fragment)
STRING	XP_006490101.1	1e-102	(Citrus sinensis)
STRING	XP_006421693.1	1e-102	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	3e-99	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]