PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G038179.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 367aa    MW: 40445.7 Da    PI: 5.8284
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G038179.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.4e-21172222256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+ge
  HL.SW.v1.0.G038179.1 172 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRGE 222
                           59******9.**********965...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.85E-34171231No hitNo description
SuperFamilySSF541711.63E-23172230IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-32172230IPR001471AP2/ERF domain
SMARTSM003803.4E-38172235IPR001471AP2/ERF domain
PROSITE profilePS5103223.235172229IPR001471AP2/ERF domain
PRINTSPR003673.6E-11173184IPR001471AP2/ERF domain
PfamPF008471.9E-14173222IPR001471AP2/ERF domain
PRINTSPR003673.6E-11195211IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MAAAIDFYSS SSSSQAPVFS DPFREELMKA LEPFMKSASP ASPSTSYITS FSSPPSSSFS  60
SYPSCSSSPV SSTQTNFYPE TQDFFSSHIN QMGFQPQTGS LGLNQLTQSQ IVQIQAQIFF  120
QQQQQQKQQR TIMAKASTHN QWQSLNPQTL NYLSPKAIPM KHVGTPLKPN KLYRGVRQRH  180
WGKWVAEIRL PKNRTRLWLG TFDTAEEAAL AYDKAAYKLR GEFARLNFPH LRHEGAHVTG  240
EFGEYKPLHS SVDAKLQAIC QSLANNNSQK QGSSGDSCSE AEEKPTIVSV PMESKMVSDN  300
SSIGEPKAEL EGSSSSSPLS DESSAGSSSP ESDITFLDFS SDSHWDDTQN FDLGKYPSVE  360
IDWDSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22171229160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007047994.21e-128PREDICTED: ethylene-responsive transcription factor ERF060
TrEMBLA0A2P5C1W71e-176A0A2P5C1W7_PARAD; AP2/ERF transcription factor
STRINGEOX921511e-126(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.16e-58related to AP2 4