PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G038197.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 309aa    MW: 34918.1 Da    PI: 9.476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G038197.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.73.1e-092873346
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                          +WT+eE +++ +a + + ++   +W ++a++++ g+t  ++   ++ 
  HL.SW.v1.0.G038197.1 28 KWTPEENKRFENALAVYDKDtpdRWVKVAEMIP-GKTVGDVMKQYRE 73
                          7********************************.****999998875 PP
2Myb_DNA-binding46.11.1e-14136180347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
  HL.SW.v1.0.G038197.1 136 PWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 180
                           8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-52374IPR009057Homeodomain-like
PROSITE profilePS512938.7672479IPR017884SANT domain
SMARTSM007177.5E-102577IPR001005SANT/Myb domain
CDDcd001676.03E-82874No hitNo description
SuperFamilySSF466895.8E-122881IPR009057Homeodomain-like
PfamPF002491.3E-72873IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-12127184IPR009057Homeodomain-like
PROSITE profilePS5129420.205129185IPR017930Myb domain
SuperFamilySSF466891.93E-17131184IPR009057Homeodomain-like
TIGRFAMsTIGR015579.2E-18132184IPR006447Myb domain, plants
SMARTSM007173.5E-13133183IPR001005SANT/Myb domain
PfamPF002494.1E-12136180IPR001005SANT/Myb domain
CDDcd001676.16E-11136181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MYRGIELLSP ATYLQNSNWL FQENKAAKWT PEENKRFENA LAVYDKDTPD RWVKVAEMIP  60
GKTVGDVMKQ YRELEEDVSD IEAGLIPIPG YSTTNSFTLE WVNNQGCEGL KQFYSVGGKR  120
GTNTRPSDQE RKKGVPWTEE EHRQFLLGLK KYGKGDWRNI SRNFVTTRTP TQVASHAQKY  180
FIRQVTGGKD KRRSSIHDIT TVNLPESKSP SPESGRSPPS PDHSVPVMQS NSKIAAMVKQ  240
QQYDWKPSNE SLPMVFNHIN SNAFGGPFCG ISSYGSKLQE QNLLSGNLRG SQFGAYNTLY  300
QMQSMHHQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-1729941176RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109645.10.0transcription factor DIVARICATA
SwissprotQ8S9H71e-119DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2P5CRL90.0A0A2P5CRL9_TREOI; GAMYB transcription factor
STRINGXP_010109645.11e-180(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-122MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]