PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G038216.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

bHLH

Protein Properties

Length: 209aa MW: 23349.3 Da PI: 9.8196

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G038216.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.2	1.9e-05	178	205	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS HLH 3 rahnerErrRRdriNsafeeLrellPka 30 + h +Er+RR+++ ++f L ++P + HL.SW.v1.0.G038216.1 178 KDHILAERKRREKLSQRFIALSAIVPGL 205 56999*********************75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.29	175	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.11E-6	176	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-5	179	206	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.07E-4	180	207	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MDITSVKSLS ELGMNDPNMI NRHWHMNSLD EFSNSMVLPI AASLGENLHH LHPHPHSNSN 60 FSLVKASSFD NNSHMGIDYR GMMKHHKPNG WNSNEIISHL SNNPPQQVAS SPNLYSFAAG 120 SNNYVIDEMG YVRPKEEAVD GLKNINTTSA FPSDYVLKTN QVANKRFNNT STKLSQTKDH 180 ILAERKRREK LSQRFIALSA IVPGLKKV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	183	188	ERKRRE
2	184	189	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010107640.2	7e-62	transcription factor bHLH18
TrEMBL	A0A2P5ECZ5	1e-66	A0A2P5ECZ5_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_010107640.1	2e-54	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF455	34	164

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.1	5e-13	bHLH family protein