PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G039347.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Protein Properties

Length: 917aa MW: 101215 Da PI: 6.7489

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G039347.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.9	7.6e-18	322	421	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k l+ sd+++ grlvlpk +ae++ ++++e+ l+++d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F+++ HL.SW.v1.0.G039347.1 322 FEKMLSASDAGRIGRLVLPKACAEAYfpPISQPEGLPLKIQDVKGKEWVFQFRFwpNNNSRMYVLE-GVTPCIQSMQLQAGDTVTFSRM 409 89************************555566778***********99899999999.*******************87 PP SSSEE..EEEEE- CS B3 86 grsefelvvkvfr 98 + e++l +++++ HL.SW.v1.0.G039347.1 410 D-PEGKLIMGFRK 421 6.77777777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.7E-29	314	425	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.54E-19	319	421	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.21E-22	320	421	No hit	No description
PROSITE profile	PS50863	11.138	322	423	IPR003340	B3 DNA binding domain
SMART	SM01019	2.5E-20	322	423	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-15	322	421	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	14.138	587	637	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.7E-9	592	634	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010030	Biological Process	positive regulation of seed germination
GO:2000034	Biological Process	regulation of seed maturation
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 917 aa Download sequence Send to blast
MACMNVSCGA STSIEWKKGW ALRSGGYANL CDKCGSAYEQ LVFCDVYHST ESGWRECISC 60 GKRLHCGCIA SRFLLELLDC GGVKCANCAK KSGSHPITSA DKPNELGTSK VSELQHISSN 120 DQLDGNNIDS IKFMQLSNDT EGIGLRHLLQ SQNEETNGLF RKMKQEEVPP VGEAGNTFLS 180 SFNQGSTGSS EAAKAELRKA SIGANDVYEA LPQTNLTMTL GGPLGHSNSF PGAIIDEREQ 240 SKTSSLFLQG ARSRHLLPKP PRSTVGTSLE ANTNMASQVR VARPPAEGRG RNQLLPRYWP 300 RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLK 360 IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR 420 KASNSVAMQD THPSAIHNGG HSSEPFISGV FENLPIISGY SGLLQSLKGS ADTHLHALSK 480 QLSSANADIS WNKIEKHEGR SRESLLLPSL MVPERKRARN LGSKNKRLHI DSQEALELKL 540 TWEEAQDLLR PPPSVKPSTV MIEDHEFEEY EEPPVLGKRS IFIVRSTGEQ EQWTQCDSCS 600 KWRRLPVDVL LPHKWTCADN VWDQIRCSCS VPDELTPRVL ESLLRMNKEF KKRRVLSSTN 660 RPPTQENESS GLDALANAAM LGDNAADPGT TTVATTTKHP RHRPGCSCIV CIQPPSGKGK 720 HKPSCTCNVC MTVKRRFKTL MMNKKKRQSE REAELANRNQ KTLWDPRDET EVDSTSRHVS 780 SQLDPSDNET RSANESESKN QCVLAETTKE ALDLNSHPVG REEDSQAGSS RVTMMSLLQN 840 ASRPLDTYLK QNGLTSLTQE QQQQQTSSAS HAIPQATNES EEQVNEDQCP NPIAQEQESE 900 GIEQCGEDQS PKIHSD*

Sequence ? help Back to Top

Protein Sequence Length: 917 aa Download sequence Send to blast

MACMNVSCGA STSIEWKKGW ALRSGGYANL CDKCGSAYEQ LVFCDVYHST ESGWRECISC  60
GKRLHCGCIA SRFLLELLDC GGVKCANCAK KSGSHPITSA DKPNELGTSK VSELQHISSN  120
DQLDGNNIDS IKFMQLSNDT EGIGLRHLLQ SQNEETNGLF RKMKQEEVPP VGEAGNTFLS  180
SFNQGSTGSS EAAKAELRKA SIGANDVYEA LPQTNLTMTL GGPLGHSNSF PGAIIDEREQ  240
SKTSSLFLQG ARSRHLLPKP PRSTVGTSLE ANTNMASQVR VARPPAEGRG RNQLLPRYWP  300
RITDQELQQI SGDSNSTIVP LFEKMLSASD AGRIGRLVLP KACAEAYFPP ISQPEGLPLK  360
IQDVKGKEWV FQFRFWPNNN SRMYVLEGVT PCIQSMQLQA GDTVTFSRMD PEGKLIMGFR  420
KASNSVAMQD THPSAIHNGG HSSEPFISGV FENLPIISGY SGLLQSLKGS ADTHLHALSK  480
QLSSANADIS WNKIEKHEGR SRESLLLPSL MVPERKRARN LGSKNKRLHI DSQEALELKL  540
TWEEAQDLLR PPPSVKPSTV MIEDHEFEEY EEPPVLGKRS IFIVRSTGEQ EQWTQCDSCS  600
KWRRLPVDVL LPHKWTCADN VWDQIRCSCS VPDELTPRVL ESLLRMNKEF KKRRVLSSTN  660
RPPTQENESS GLDALANAAM LGDNAADPGT TTVATTTKHP RHRPGCSCIV CIQPPSGKGK  720
HKPSCTCNVC MTVKRRFKTL MMNKKKRQSE REAELANRNQ KTLWDPRDET EVDSTSRHVS  780
SQLDPSDNET RSANESESKN QCVLAETTKE ALDLNSHPVG REEDSQAGSS RVTMMSLLQN  840
ASRPLDTYLK QNGLTSLTQE QQQQQTSSAS HAIPQATNES EEQVNEDQCP NPIAQEQESE  900
GIEQCGEDQS PKIHSD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-70	300	429	2	131	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM439822	6e-47	AM439822.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X016243.17, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024030048.1	0.0	B3 domain-containing transcription repressor VAL2 isoform X1
Swissprot	Q6Z3U3	0.0	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2P5F4P1	0.0	A0A2P5F4P1_TREOI; Zinc finger-type transcription factor
STRING	XP_010109656.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11018	32	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	0.0	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]