PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G039721.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

WOX

Protein Properties

Length: 393aa MW: 43717.2 Da PI: 7.6912

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G039721.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.7	8.6e-18	57	117	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p ++e++++ ++l ++ +++V++WFqNr+ + k+ HL.SW.v1.0.G039721.1 57 KPRWNPKPEQIRILEAIFNSgMVNPPRDEIRRIRAQLqeygQVGDANVFYWFQNRKSRSKH 117 89***************99***********************************995 PP
2	Wus_type_Homeobox	112.6	2e-36	56	118	2	64
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P+++ei+ri+a+L+eyG+++d+NVfyWFQNrk+R+++k HL.SW.v1.0.G039721.1 56 PKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118 689**********************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.01E-12	53	123	IPR009057	Homeodomain-like
PROSITE profile	PS50071	10.495	53	118	IPR001356	Homeobox domain
SMART	SM00389	7.5E-9	55	122	IPR001356	Homeobox domain
CDD	cd00086	4.49E-8	56	118	No hit	No description
Gene3D	G3DSA:1.10.10.60	8.7E-7	56	117	IPR009057	Homeodomain-like
Pfam	PF00046	2.0E-15	57	117	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MASSNRHWPS MFKSKPCNSH HQWQHEINPS LITGGLCHRA PFTSVVGGCD ERSPEPKPRW 60 NPKPEQIRIL EAIFNSGMVN PPRDEIRRIR AQLQEYGQVG DANVFYWFQN RKSRSKHKLR 120 HLQTSKHHHS NNPQTTTTTA PSSSSSSSSE NKTASPKAPA RGFSSNLATR HDHHQTSPTA 180 SVNNQTIFQT NNVNSHEFLS PTDHHFFFPA PTTTTTTSQG FCFPQNHELS HEIGPCTSLL 240 LSEIMNHNHH HYVDSKKDHD LNNYHKNLMK MSTNDDGHSH QFSYASLTPT PRTPSNVVVS 300 STTTSTTVSA PPVPVNQIQE DQGVVGPPGG GAANNKTMVF INDVAFEVAE GPFNVREAFG 360 EDAVLIHANG QLVPTDEWGV TPHSLHHGAF YYL

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MASSNRHWPS MFKSKPCNSH HQWQHEINPS LITGGLCHRA PFTSVVGGCD ERSPEPKPRW  60
NPKPEQIRIL EAIFNSGMVN PPRDEIRRIR AQLQEYGQVG DANVFYWFQN RKSRSKHKLR  120
HLQTSKHHHS NNPQTTTTTA PSSSSSSSSE NKTASPKAPA RGFSSNLATR HDHHQTSPTA  180
SVNNQTIFQT NNVNSHEFLS PTDHHFFFPA PTTTTTTSQG FCFPQNHELS HEIGPCTSLL  240
LSEIMNHNHH HYVDSKKDHD LNNYHKNLMK MSTNDDGHSH QFSYASLTPT PRTPSNVVVS  300
STTTSTTVSA PPVPVNQIQE DQGVVGPPGG GAANNKTMVF INDVAFEVAE GPFNVREAFG  360
EDAVLIHANG QLVPTDEWGV TPHSLHHGAF YYL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020418316.1	1e-131	WUSCHEL-related homeobox 9 isoform X2
TrEMBL	A0A2P5DXB2	1e-155	A0A2P5DXB2_PARAD; Homeodomain transcription factor
STRING	EMJ13975	1e-130	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3824	33	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33880.1	1e-61	homeobox-3