PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G039797.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 374aa MW: 40724.8 Da PI: 8.3726

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G039797.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.8	6.7e-40	73	132	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+ HL.SW.v1.0.G039797.1 73 PDKIIPCPRCKSMETKFCYFNNYNVNQPRHFCKNCQRYWTAGGSMRNVPVGAGRRKNKHL 132 7899******************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	70	130	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	9.2E-32	75	131	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.509	77	131	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	79	115	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 374 aa Download sequence Send to blast
MSQIKNISEN CIGTDQGIKL FGRTIPLRHT QIPTKSQIKD CDSDIRKSEK DSPVKANSKE 60 NSEEEEEKVF KKPDKIIPCP RCKSMETKFC YFNNYNVNQP RHFCKNCQRY WTAGGSMRNV 120 PVGAGRRKNK HLASQFRHIM ASVDGTQNSS DDPSTGKVLR FCQEQVPDNV DVSQCQSSSL 180 EGDVGAPARS HPVPCYPVVS WSPGWSIPAA AAAAASQHSQ QFFVSNAGDS SQVQWLQAPV 240 LPAAPGQCAP AVPVQFVQAA SYWGCMPVWA AAQAGNVSMS PTLGKHSREE SEKCIFAPKT 300 MGIEGENDAL KNRIRAGLGS EIDKENSVVN GSVFKRLAHS KIEGKDHVLY SSSPVLEANP 360 AAVSRSHSFQ EST*

Sequence ? help Back to Top

Protein Sequence Length: 374 aa Download sequence Send to blast

MSQIKNISEN CIGTDQGIKL FGRTIPLRHT QIPTKSQIKD CDSDIRKSEK DSPVKANSKE  60
NSEEEEEKVF KKPDKIIPCP RCKSMETKFC YFNNYNVNQP RHFCKNCQRY WTAGGSMRNV  120
PVGAGRRKNK HLASQFRHIM ASVDGTQNSS DDPSTGKVLR FCQEQVPDNV DVSQCQSSSL  180
EGDVGAPARS HPVPCYPVVS WSPGWSIPAA AAAAASQHSQ QFFVSNAGDS SQVQWLQAPV  240
LPAAPGQCAP AVPVQFVQAA SYWGCMPVWA AAQAGNVSMS PTLGKHSREE SEKCIFAPKT  300
MGIEGENDAL KNRIRAGLGS EIDKENSVVN GSVFKRLAHS KIEGKDHVLY SSSPVLEANP  360
AAVSRSHSFQ EST*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024032061.1	1e-108	cyclic dof factor 3
TrEMBL	A0A2P5A7T9	1e-145	A0A2P5A7T9_PARAD; Zinc finger, Dof-type
STRING	XP_010089192.1	1e-105	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF25573	2	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	2e-49	cycling DOF factor 2