PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G039799.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

LBD

Protein Properties

Length: 127aa MW: 14345.4 Da PI: 9.7561

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G039799.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	46.6	9.5e-15	3	71	25	99
DUF260 25 eqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 e+p+kf nvh +FGasnv+kl +++ +++r++ y+Ae r++dP y+ +g+i+ lq+q+ +l++el+++++ HL.SW.v1.0.G039799.1 3 ERPQKFVNVHNIFGASNVSKLHNEVLPHQRPA------YKAETRMKDPAYNYLGTISVLQRQVIRLQKELDATNT 71 689*************************95......******************************99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.8E-12	3	70	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MPERPQKFVN VHNIFGASNV SKLHNEVLPH QRPAYKAETR MKDPAYNYLG TISVLQRQVI 60 RLQKELDATN TDLMRHAHTI DHHYVAKSIH PRFGLAHIDH SSGTLRSILT YFDPSSGVDP 120 IVPVFP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-30	2	77	34	115	LOB family transfactor Ramosa2.1
5ly0_B	1e-30	2	77	34	115	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010029135.1	1e-35	PREDICTED: LOB domain-containing protein 25
Refseq	XP_015879300.1	1e-35	LOB domain-containing protein 25
Refseq	XP_015897788.1	1e-35	LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	6e-31	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A2P5EFD3	2e-36	A0A2P5EFD3_TREOI; Lateral organ boundaries domain containing protein
STRING	XP_010029135.1	4e-35	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1091	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	3e-33	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]