PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039828.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WOX
Protein Properties Length: 231aa    MW: 26663 Da    PI: 9.7707
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039828.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.54.2e-22103162357
                           --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
              Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                           +R+++t+eql++Le+l+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  HL.SW.v1.0.G039828.1 103 SRWNPTPEQLRALEDLYRRgTRTPSAEQIQHITSQLrrygKIEGKNVFYWFQNHKARERQ 162
                           7*****************99**************************************97 PP
2Wus_type_Homeobox115.23.1e-37102164365
     Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                           ++RW+PtpeQ++ Le+ly++G+rtP++e+iq+it++L++yGkie+kNVfyWFQN+kaRerqk+
  HL.SW.v1.0.G039828.1 102 SSRWNPTPEQLRALEDLYRRGTRTPSAEQIQHITSQLRRYGKIEGKNVFYWFQNHKARERQKR 164
                           79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.6E-5100167IPR001356Homeobox domain
PfamPF000461.0E-19103162IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-9103162IPR009057Homeodomain-like
SuperFamilySSF466898.98E-13103168IPR009057Homeodomain-like
CDDcd000864.13E-6104164No hitNo description
PROSITE profilePS5007111.175108163IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MWMMGYNDAG ELNLHDSFNA TARKLRPLIP RPLQPSPNSS HQTTTTNPNP PCLSRNSTHP  60
DFFAQYHHLA STTQHNMSDY HHQNMMMSKR SELSIGQQVV VSSRWNPTPE QLRALEDLYR  120
RGTRTPSAEQ IQHITSQLRR YGKIEGKNVF YWFQNHKARE RQKRRRQIME SSPEDLEMSD  180
TIQKNNSKEM TLLEASNKTA GYEVEQTKNW APTSTTLAEI IIFISLGLLH *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097568.13e-88WUSCHEL-related homeobox 1
TrEMBLA0A2P5E0Q31e-114A0A2P5E0Q3_TREOI; Homeodomain transcription factor
STRINGXP_010097568.11e-87(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-50WUSCHEL related homeobox 1