PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039844.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 336aa    MW: 37532.7 Da    PI: 5.5796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039844.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3103.61e-3285191199
                           EEEE-..-HHHHTT-EE--HHH.HTT..........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                           f+k ltpsdv+k++rlv+pk++ae++          gg+  ++  l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+
  HL.SW.v1.0.G039844.1  85 FEKPLTPSDVGKLNRLVIPKQHAEKYfplgggdssgGGE--KGLLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSRYVKEKRLDAGDV 171
                           99****************************999975444..6779******************************************** PP

                           EEEEE-SSSEE..EEEEE-S CS
                    B3  80 vvFkldgrsefelvvkvfrk 99 
                           v+F+++ r++ +l+++++r+
  HL.SW.v1.0.G039844.1 172 VLFERHCRDNDRLFIGWRRR 191
                           ****99998889******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-4174201IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-3182189IPR015300DNA-binding pseudobarrel domain
CDDcd100172.13E-2883176No hitNo description
PfamPF023622.6E-2985191IPR003340B3 DNA binding domain
SMARTSM010195.0E-2585192IPR003340B3 DNA binding domain
PROSITE profilePS5086314.4885192IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MDNSPLSSSP HNIPEFYHYQ TAPFSDIMSR TNNAASNPFN LNQYDDENDE HNDVVSDERY  60
HHPNQDDDND NNNDDEEIIM KEPMFEKPLT PSDVGKLNRL VIPKQHAEKY FPLGGGDSSG  120
GGEKGLLLSF EDESGKFWRF RYSYWNSSQS YVLTKGWSRY VKEKRLDAGD VVLFERHCRD  180
NDRLFIGWRR RAAAQDSAAV AAAHASNCGG GGGGGDSCIN NNNINNTGWT RMLYSAHPYP  240
THPHYHHHPA MPYHPDSIHA GISCSVPNQT TSSVNGNSKI LRLFGVNLEC HEQQSDEINE  300
NGLEPSTPDG SSLSSQGPPA QHQFYPPAHY SDHMI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-48811914113B3 domain-containing transcription factor NGA1
5os9_B3e-48811914113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018835309.12e-97PREDICTED: B3 domain-containing protein At2g36080-like isoform X2
SwissprotQ9FNI33e-66Y5625_ARATH; B3 domain-containing protein At5g06250
TrEMBLA0A2P5EBG71e-133A0A2P5EBG7_TREOI; B3 DNA binding domain containing protein
STRINGVIT_08s0007g02810.t017e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11580.12e-51B3 family protein