PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G039916.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 351aa    MW: 38160.3 Da    PI: 7.3848
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G039916.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.51.3e-091940426
                          ---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                          + C+f+a+ G C +GdrCkF H+
  HL.SW.v1.0.G039916.1 19 KVCKFWAE-GRCVRGDRCKFLHS 40
                          57******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.071542IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-61741IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-81740IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-71940IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-61940IPR000571Zinc finger, CCCH-type
SMARTSM003204.5E-54687IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.101.1E-4248348IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004005.4E-55087IPR001680WD40 repeat
SuperFamilySSF509781.01E-4550348IPR017986WD40-repeat-containing domain
PROSITE profilePS5029414.34553263IPR017986WD40-repeat-containing domain
PROSITE profilePS5008211.8455396IPR001680WD40 repeat
PRINTSPR003203.8E-67488IPR020472G-protein beta WD-40 repeat
PROSITE patternPS0067807488IPR019775WD40 repeat, conserved site
SMARTSM0032048131168IPR001680WD40 repeat
SMARTSM003200.0011179215IPR001680WD40 repeat
PROSITE profilePS500829.874185215IPR001680WD40 repeat
PfamPF004000.021187215IPR001680WD40 repeat
PRINTSPR003203.8E-6202216IPR020472G-protein beta WD-40 repeat
SMARTSM003202.2E-7217254IPR001680WD40 repeat
PfamPF004004.9E-5219253IPR001680WD40 repeat
PROSITE profilePS5008210.709224263IPR001680WD40 repeat
PRINTSPR003203.8E-6241255IPR020472G-protein beta WD-40 repeat
SMARTSM00320140310347IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGVLGRSNRV FVRPGSIEKV CKFWAEGRCV RGDRCKFLHS WFRGDLYSYL ANLQGHNKAV  60
TGLALPHSES GDKLYSSSYD GTLCVWDCHT GQTTRVINFG APIGCLINEG PWLFIGLPNL  120
IKVWNTQNNN GPEFAFTLEG PVGQVNSMTL VNGTLFAGTQ SGQILAWKAS SEEANPFIPV  180
SVPSSVTHEG AVVCLCYGGN RLFSGSLDSS IKVWDENLQC VATLKGHSDG VMSLVFWGYY  240
LLSCSLDGTV KIWATSQGGQ IEENYTHKEG HGVLALNGIT LPKKTDAEAD QNILLCSCND  300
NSVRLYALPS FEEKGRFFTR QEVRTIQKGP GGLIFTGDGA GRTTVWKTNV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-19503278323Tako8
6g6n_A2e-19503278323Tako8
6g6n_B2e-19503278323Tako8
6g6n_C2e-19503278323Tako8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021828888.11e-131zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ21e-120C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2P5A9K41e-160A0A2P5A9K4_PARAD; Guanine nucleotide-binding protein, beta subunit
STRINGXP_008232923.11e-130(Prunus mume)
STRINGEMJ216631e-129(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2176222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-122zinc finger WD40 repeat protein 1