PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G040104.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB_related
Protein Properties Length: 106aa    MW: 12046.4 Da    PI: 9.0356
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G040104.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-081558344
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                          +WT+e  +l+ +a + +  +   +W++Ia+ +g g t++++k  +
  HL.SW.v1.0.G040104.1 15 NWTAEKNKLFENALAIYDRDapdRWHKIAKIVG-GTTAEEVKRQY 58
                          8*****************99*************.********877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.621166IPR017884SANT domain
SMARTSM007173.6E-61264IPR001005SANT/Myb domain
SuperFamilySSF466891.96E-111470IPR009057Homeodomain-like
CDDcd001675.62E-71562No hitNo description
PfamPF002491.0E-51558IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-41565IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MASTKLSSST ASSPNWTAEK NKLFENALAI YDRDAPDRWH KIAKIVGGTT AEEVKRQYEI  60
LKEDIYRIES GKFPLPKYRK CHQGSSNISN DEQREWANGQ HPDKH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-26694186RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089027.26e-40protein RADIALIS-like 4
SwissprotQ1A1732e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2P5FXK95e-45A0A2P5FXK9_TREOI; Octamer-binding transcription factor
STRINGXP_010089027.12e-39(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.29e-31RAD-like 6