PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G040312.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Dof

Protein Properties

Length: 312aa MW: 34233.1 Da PI: 6.2225

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G040312.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	113	1.4e-35	14	69	6	61
zf-Dof 6 lkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +cprC +ntkfCyynnysl+qPryfCk+CrryWtkGG+lrnvPvGgg+rkn++ HL.SW.v1.0.G040312.1 14 PNCPRCGCSNTKFCYYNNYSLTQPRYFCKGCRRYWTKGGSLRNVPVGGGCRKNRRG 69 58***************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-26	10	68	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.211	14	68	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.2E-30	14	68	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	16	52	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MERGIWNPNA EISPNCPRCG CSNTKFCYYN NYSLTQPRYF CKGCRRYWTK GGSLRNVPVG 60 GGCRKNRRGK SLRLSTATDG AILAKNLNYG TTTVSSGLVG HSYGANNNGS FLDEYSNRSS 120 MLPDGSHIDL ALVYANFLNQ KPDISKSTTM NNSNNNGLEI LELGCDHLID PSLEFISSTP 180 MSNVNIQMAQ ENGLVGCHAS NANLSELTAE NCCSTGNEQI YNFCGLDSFH KQYRDRTEHC 240 VSDHFGLPSL PGQEVLWSSS SLHQMMVSQA IQVTQLPVLG PEAHQDENLS TVNWSTFDLP 300 SEDTFSAPEK I*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00405	DAP	Transfer from AT3G52440	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010106991.1	1e-103	dof zinc finger protein DOF3.5
TrEMBL	A0A2P5ATX1	1e-169	A0A2P5ATX1_TREOI; Zinc finger, Dof-type
STRING	XP_010106991.1	1e-102	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1817	33	94

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52440.1	3e-49	Dof family protein