PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G040662.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 185aa    MW: 21316.6 Da    PI: 10.4969
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G040662.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.29.2e-28959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krien + rqvtfskRrng+lKKA+ELS LCdaev +i+fs++gkly y+s
  HL.SW.v1.0.G040662.1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSLLCDAEVGLIVFSPSGKLYQYAS 59
                          79***********************************************86 PP
2K-box75.61.3e-25811738100
                 K-box   8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                           +++++  e ++++++ +k+ +e+L+ ++R+l GedL++L +keL+qLe+qL+ +++++R kK ++l e+i++l++k ++l eenk+L k
  HL.SW.v1.0.G040662.1  81 DQHSRAIEFWRTKIEEMKRSTETLEANLRNLAGEDLSTLGMKELKQLERQLKIGVERVRCKKRRILSEHINYLKRKRRDLLEENKRLLK 169
                           46788899********************************************************************************* PP

                 K-box  97 klee 100
                           k+ e
  HL.SW.v1.0.G040662.1 170 KVSE 173
                           9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.8E-41160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.212161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-31274IPR002100Transcription factor, MADS-box
CDDcd002651.58E-38270No hitNo description
PRINTSPR004041.3E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.2E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014862.9E-2283171IPR002487Transcription factor, K-box
PROSITE profilePS5129713.7387177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSLLCD AEVGLIVFSP SGKLYQYASH  60
DMESSIVRYR SEMGLLGSAD DQHSRAIEFW RTKIEEMKRS TETLEANLRN LAGEDLSTLG  120
MKELKQLERQ LKIGVERVRC KKRRILSEHI NYLKRKRRDL LEENKRLLKK VSEFSGQDSS  180
QASL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-23169169MEF2 CHIMERA
6byy_B5e-23169169MEF2 CHIMERA
6byy_C5e-23169169MEF2 CHIMERA
6byy_D5e-23169169MEF2 CHIMERA
6bz1_A4e-23169169MEF2 CHIMERA
6bz1_B4e-23169169MEF2 CHIMERA
6bz1_C4e-23169169MEF2 CHIMERA
6bz1_D4e-23169169MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141157KRRILSEHINYLKRKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 (By similarity). {ECO:0000250}.
UniProtProbable transcription factor that promotes early floral meristem identity in synergy with APETALA1, FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1. {ECO:0000269|PubMed:10765981}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM1900739e-36KM190073.1 Carya cathayensis MADS-like protein (TM) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017888.16e-99agamous-like MADS-box protein AGL1
SwissprotQ6R4S38e-47CAL_BRARR; Transcription factor CAULIFLOWER
SwissprotQ6R4S68e-47CAL_BRARC; Transcription factor CAULIFLOWER
SwissprotQ9SBK99e-47CAL_BRARP; Transcription factor CAULIFLOWER
TrEMBLA0A2P5FDA01e-104A0A2P5FDA0_TREOI; MADS-box transcription factor
STRINGVIT_17s0000g01230.t015e-82(Vitis vinifera)
STRINGXP_010086970.14e-82(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.12e-49AGAMOUS-like 16
Publications ? help Back to Top
  1. Li XF,Shen RJ,Liu PL,Tang ZC,He YK
    Molecular characters and morphological genetics of CAL gene in Chinese cabbage.
    Cell Res., 2000. 10(1): p. 29-38
    [PMID:10765981]