PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G041057.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 145aa    MW: 16818.3 Da    PI: 10.0794
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G041057.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.31.3e-25957149
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                          kri+n +nrqvtfskRr+g++KKA ELSv Cd +v+v+i++ +gk+ye 
  HL.SW.v1.0.G041057.1  9 KRIDNATNRQVTFSKRRKGLFKKADELSVVCDSQVSVLILAGSGKVYEH 57
                          79*********************************************97 PP
2K-box73.37.2e-2571139169
                 K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                           yq+++g + + +++e++q  l+kLk+++++L+ ++R+++GedL++Ls++eL+ Le+++++s++ iR++K
  HL.SW.v1.0.G041057.1  71 YQATTGIDIWRSNYEKMQDYLKKLKERNRSLRMQIRQRMGEDLNDLSFEELHTLEEEMDTSVRVIRERK 139
                           78899999************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-32160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006628.371161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-31395IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-24323IPR002100Transcription factor, MADS-box
CDDcd002652.72E-33380No hitNo description
PfamPF003191.2E-211056IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-242338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-243859IPR002100Transcription factor, MADS-box
PfamPF014862.1E-1583139IPR002487Transcription factor, K-box
PROSITE profilePS5129711.74884144IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MVRGKIQIKR IDNATNRQVT FSKRRKGLFK KADELSVVCD SQVSVLILAG SGKVYEHNSG  60
STTTKQVIDQ YQATTGIDIW RSNYEKMQDY LKKLKERNRS LRMQIRQRMG EDLNDLSFEE  120
LHTLEEEMDT SVRVIRERKC LFGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-15197191MEF2 CHIMERA
6byy_B7e-15197191MEF2 CHIMERA
6byy_C7e-15197191MEF2 CHIMERA
6byy_D7e-15197191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008466510.15e-63PREDICTED: floral homeotic protein DEFICIENS isoform X1
RefseqXP_016903517.12e-63PREDICTED: floral homeotic protein DEFICIENS isoform X2
SwissprotE0CPH46e-60AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLA0A2P5BT643e-64A0A2P5BT64_PARAD; MADS-box transcription factor
STRINGXP_008466510.12e-62(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-54MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]