PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G041290.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Whirly
Protein Properties Length: 231aa    MW: 25348 Da    PI: 9.8166
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G041290.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly185.78.2e-58521872137
                Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkv 90 
                           vyk+kaal+v++++ptf++ldsg  +++r+G ++l++++a++erkydWek+q fals+tev++l++l++++sceffhdp++ +sn+G+v
  HL.SW.v1.0.G041290.1  52 VYKGKAALSVNPILPTFTKLDSGIHVVERRGCMMLKFTPAIGERKYDWEKRQMFALSPTEVGSLISLGPNDSCEFFHDPSMLSSNAGQV 140
                           9**************************************************************************************** PP

                Whirly  91 rkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                           rk+l ++P+++G G++++l+v n+++k+++++svP + aef v++++
  HL.SW.v1.0.G041290.1 141 RKSLTIRPHSNGGGYMISLTVVNNILKSKDNISVPFTTAEFIVVKTA 187
                           ********************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.108.1E-6948206IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.02E-6148208IPR009044ssDNA-binding transcriptional regulator
PfamPF085366.9E-5752186IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
NQICRNIING KDGNPSNGLP SFTFTSRAGI STSGQNINIK GGIAGFAAPY TVYKGKAALS  60
VNPILPTFTK LDSGIHVVER RGCMMLKFTP AIGERKYDWE KRQMFALSPT EVGSLISLGP  120
NDSCEFFHDP SMLSSNAGQV RKSLTIRPHS NGGGYMISLT VVNNILKSKD NISVPFTTAE  180
FIVVKTACSY ALPHILGWDR MTDKVAKDIP GRRTADIKFD RPQFLDSEWD K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A3e-784820413169StWhy2
3n1i_A3e-784820413169protein StWhy2
3n1j_A3e-784820413169Protein StWhy2
3n1k_A3e-784820413169protein StWhy2
3n1l_A3e-784820413169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024031621.11e-120single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0342e-82WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2P5FBJ31e-127A0A2P5FBJ3_TREOI; Transcription factor
STRINGXP_010112062.11e-107(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113833338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.17e-84WHIRLY 2