PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G041845.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family HD-ZIP
Protein Properties Length: 190aa    MW: 22468.5 Da    PI: 5.1311
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G041845.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-18355456
                          -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
              Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                          +++++++q+++Le+ F+ ++++  e++ +LA++lg++ rqV vW+qN+Ra+++
  HL.SW.v1.0.G041845.1  3 KRRLNEDQVRVLERDFNYDKKLESEHKHQLAEQLGIPARQVAVWYQNKRARWR 55
                          45799***********************************************9 PP
2HD-ZIP_I/II106.52.1e-34292292
           HD-ZIP_I/II  2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92
                          +krrl+++qv++LE+ F+ ++kLe+e+K++la++Lg+ +rqvavW+qn+RAR++t+ lE+d+++L++++d+  +e++rLe+ev+ Lr el+
  HL.SW.v1.0.G041845.1  2 NKRRLNEDQVRVLERDFNYDKKLESEHKHQLAEQLGIPARQVAVWYQNKRARWRTQSLEVDCTTLQHRLDTALAEKRRLEREVRVLRGELD 92
                          69************************************************************************************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003892.6E-11161IPR001356Homeobox domain
PROSITE profilePS5007116.115157IPR001356Homeobox domain
CDDcd000864.54E-11358No hitNo description
SuperFamilySSF466892.92E-15365IPR009057Homeodomain-like
PfamPF000462.2E-15355IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.9E-17460IPR009057Homeodomain-like
PROSITE patternPS0002703255IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MNKRRLNEDQ VRVLERDFNY DKKLESEHKH QLAEQLGIPA RQVAVWYQNK RARWRTQSLE  60
VDCTTLQHRL DTALAEKRRL EREVRVLRGE LDMARQALQL SNNNTNTIYY DNNIHNNNVV  120
SSYCTTTTTT TDQELEREQE GDGRSCSSFS DNPQYDKNVI NNYDDHHLDH DDDQVLQIDH  180
DFFSNLIDW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006451774.14e-47homeobox-leucine zipper protein ATHB-52
RefseqXP_006464812.14e-47homeobox-leucine zipper protein ATHB-52
SwissprotQ9FN292e-29ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBLA0A067E2G91e-45A0A067E2G9_CITSI; Uncharacterized protein
TrEMBLA0A2H5PUT79e-46A0A2H5PUT7_CITUN; Uncharacterized protein
TrEMBLV4WEM79e-46V4WEM7_9ROSI; Uncharacterized protein
STRINGXP_006464812.12e-46(Citrus sinensis)
STRINGXP_006451774.12e-46(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.16e-26homeobox protein 52