PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G041880.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

NF-YB

Protein Properties

Length: 175aa MW: 18687.8 Da PI: 6.788

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G041880.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	178.8	5.1e-56	29	123	1	95
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplk+yl++ HL.SW.v1.0.G041880.1 29 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKTYLAR 117 69************************************************************************************* PP NF-YB 90 yreleg 95 yre ++ HL.SW.v1.0.G041880.1 118 YREGDT 123 9665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	3.2E-53	26	125	IPR009072	Histone-fold
SuperFamily	SSF47113	3.26E-40	32	161	IPR009072	Histone-fold
Pfam	PF00808	1.8E-28	35	99	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	3.9E-21	63	81	No hit	No description
PROSITE pattern	PS00685	0	66	82	IPR003956	Transcription factor, NFYB/HAP3, conserved site
PRINTS	PR00615	3.9E-21	82	100	No hit	No description
PRINTS	PR00615	3.9E-21	101	119	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
QIIMAEAPTS PAGGSPDSGG EHSPRGSGVR EQDRYLPIAN ISRIMKKALP ANGKIAKDAK 60 DTVQECVSEF ISFITSEASD KCQKEKRKTI NGDDLLWAMA TLGFEDYIEP LKTYLARYRE 120 GDTKGSGRGG DGSGKRDGLG AGPGQNPQYV HQGSLNYINS QGQHMVVPSM QGNE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1n1j_A	6e-48	28	120	1	93	NF-YB
4awl_B	7e-48	28	120	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A	7e-48	28	120	2	94	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002523912.1	1e-106	nuclear transcription factor Y subunit B-1
Swissprot	Q8VYK4	2e-78	NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBL	A0A067DSP6	1e-104	A0A067DSP6_CITSI; Uncharacterized protein
TrEMBL	V4VAZ5	1e-104	V4VAZ5_9ROSI; Uncharacterized protein
STRING	XP_002523912.1	1e-105	(Ricinus communis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2545	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37060.3	4e-69	nuclear factor Y, subunit B8

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]