PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G041943.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ARF
Protein Properties Length: 433aa    MW: 48346.4 Da    PI: 6.8715
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G041943.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.71.4e-20117215398
                           EE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                           kvlt+sd+++ g +++pkk ae +       + ++ +  tl+ +d +g  W++++ yr+++  ++lt+GW++Fv a++L +gD+vvF+ 
  HL.SW.v1.0.G041943.1 117 KVLTQSDANNGGGFSVPKKLAEIIfpaldyhDDPPVQ--TLRARDFQGTIWRFRHVYRGRPLLHLLTTGWSKFVTAKRLVAGDSVVFS- 202
                           99*******************766*****97656555..8************************************************. PP

                           -SSSEE..EEEEE- CS
                    B3  85 dgrsefelvvkvfr 98 
                            + +++e  +++++
  HL.SW.v1.0.G041943.1 203 -RAENGEVSIGIRQ 215
                           .4488888999886 PP
2Auxin_resp62.91.2e-21232320183
            Auxin_resp   1 aahaastksvFevvYnPras.tseFvvkvekvekalk....vkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                           aa+ a+++++Fev Y+P+ + t+eF+v+++ v +a++    +++ +G Rfkm +e+ +ss  ++ +G v +v+d++p+rWp+S W++L+
  HL.SW.v1.0.G041943.1 232 AATLAAQGKPFEVSYYPSNGtTAEFCVRAAAVYAAVHairrSELGPGRRFKMGIESVNSSGVSWyMGSVNSVRDAEPSRWPGSLWQLLE 320
                           68899************986269******9998887543346889*****************************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.55E-16112203No hitNo description
Gene3DG3DSA:2.40.330.102.6E-31113218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-25113216IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.224115217IPR003340B3 DNA binding domain
SMARTSM010191.6E-12115217IPR003340B3 DNA binding domain
PfamPF023622.3E-17117215IPR003340B3 DNA binding domain
PfamPF065072.6E-17232319IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MNEPGGEIDP LLWHACAGRL VHVPPLNAKV FYFPQGHAEH AGTNADYIAA NRVPPNIHCR  60
VNAVEHKVDL NTDEVFTKIS LVPVPIEDHD NDAISGDWID DVLGGIVNLE RPIFLSKVLT  120
QSDANNGGGF SVPKKLAEII FPALDYHDDP PVQTLRARDF QGTIWRFRHV YRGRPLLHLL  180
TTGWSKFVTA KRLVAGDSVV FSRAENGEVS IGIRQVKRES VRRIRAESVI EAATLAAQGK  240
PFEVSYYPSN GTTAEFCVRA AAVYAAVHAI RRSELGPGRR FKMGIESVNS SGVSWYMGSV  300
NSVRDAEPSR WPGSLWQLLE VTWDGDVNFV KRINPWLVQV ANQAIQTNIE HNHEDTHVNN  360
NRGNNHLLLF GKLIEIGQGN CVCNVHQVTT SQHENEDTYR YSSDDSRPSP QNLESDNELI  420
IQLFGQRIFK RR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A6e-68834751396Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009598798.11e-116PREDICTED: auxin response factor 18-like isoform X1
RefseqXP_009598799.11e-116PREDICTED: auxin response factor 18-like isoform X1
RefseqXP_009598800.11e-116PREDICTED: auxin response factor 18-like isoform X1
RefseqXP_018625737.11e-116PREDICTED: auxin response factor 18-like isoform X1
RefseqXP_018625738.11e-116PREDICTED: auxin response factor 18-like isoform X2
SwissprotQ93YR91e-108ARFP_ARATH; Auxin response factor 16
TrEMBLA0A1S4DBY91e-114A0A1S4DBY9_TOBAC; Auxin response factor
STRINGXP_009598798.11e-116(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15884610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.11e-107auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]