PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G042029.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

MYB_related

Protein Properties

Length: 331aa MW: 35966.5 Da PI: 6.7501

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G042029.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.4	3e-17	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g+W++++ g+ R+ k+c++rw +yl HL.SW.v1.0.G042029.1 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 61 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.8E-24	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.316	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.88E-22	11	97	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-13	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	5.8E-16	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	2.61E-11	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.2E-11	65	106	IPR009057	Homeodomain-like
PROSITE profile	PS51294	7.202	66	105	IPR017930	Myb domain
SMART	SM00717	0.2	66	103	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGNWRSV PTNTGLMRCS KSCRLRWTNY 60 LRPGIKRGNF TPHEEGMIIH LQALLGNKTD NDIKNYWNTH LKKKLKKFHS ALDPPNINIS 120 SNKTPPPPPP PTSSTSHGGG GGSGGGGSSS DNNNFSLKQQ QQQSSSSSSS TIYASSTENI 180 SRLLEGWMRS SPKTNNNNGL VPTGDGGAAG IKSEQLPGEG GGGGGDLVSH EELESILSFE 240 NNVNSIISNN NNNISSWDRS SSTTNNCTAQ MNNHHDHHHH HDQEEEEKNS SNNNKPPLSF 300 LEKWLLDETI STNPTAGQVE ELMELSPILF *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	3e-15	14	105	27	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP229564	2e-90	KP229564.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB08) mRNA, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015899725.1	1e-117	myb-related protein 306 isoform X1
Swissprot	B3VTV7	1e-104	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A2P5EK43	1e-127	A0A2P5EK43_TREOI; MYB transcription factor
STRING	XP_010105221.1	1e-113	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8203	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	2e-80	myb domain protein 60

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]