PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042192.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family G2-like
Protein Properties Length: 235aa    MW: 25865.4 Da    PI: 6.1301
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042192.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like48.42.1e-15170229153
               G2-like   1 kprlrWtpeLHerFveaveqLGG.......sekAtPktilelmkvkgLtlehvkSHLQkY 53 
                           k++++Wt+ L +rF+ a+++L         + +A+Pk+il++m+v+gLt+e+v+SHLQ +
  HL.SW.v1.0.G042192.1 170 KAKVVWTNSLQNRFLLAIRHLSLdmcisllQPEAVPKKILDFMNVPGLTRENVASHLQIF 229
                           6799****************9532222222468*************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.4E-5146No hitNo description
PROSITE profilePS5011012.875139IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF466891.79E-11168232IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-16168229IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-17170229IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MSADDRETVL LRSAQSGMAL FILKPVSPND LKNVWQYAIK YKKGKSVVVI EEIDDSVSNC  60
DMVMNNDQGQ ISLMDTVVIH MKDSSGSIVA PGKEMVLFDE PNNNNIIGSS SDDVGIVGTL  120
VRKNYGKGDS SSTGNGTDID VDGNTTTDGS NKPPTHERDD YQERRKGPKK AKVVWTNSLQ  180
NRFLLAIRHL SLDMCISLLQ PEAVPKKILD FMNVPGLTRE NVASHLQIFN IWKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-15169231458ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101422534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27070.17e-22response regulator 13