PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042252.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 307aa    MW: 32366.4 Da    PI: 9.7276
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042252.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08106131227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt+lC+ f     Ck+G++C+FaHg+
  HL.SW.v1.0.G042252.1 106 KTRLCNKFNSAEGCKFGEKCHFAHGE 131
                           8***********************96 PP
2zf-CCCH32.51.4e-10273297126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt++C++f + G C +G+rC+FaHg
  HL.SW.v1.0.G042252.1 273 FKTKICDNFTK-GSCTFGERCHFAHG 297
                           69*********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.2963765IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-63764IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-73762IPR000571Zinc finger, CCCH-type
SMARTSM003562.53764IPR000571Zinc finger, CCCH-type
PfamPF146081.74562No hitNo description
Gene3DG3DSA:4.10.1000.103.3E-14102136IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-8103135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.385104132IPR000571Zinc finger, CCCH-type
SMARTSM003560.0027104131IPR000571Zinc finger, CCCH-type
PfamPF006426.0E-6106131IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.38E-15159239IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.1E-15168237IPR004088K Homology domain, type 1
SMARTSM003224.9E-12168238IPR004087K Homology domain
PROSITE profilePS5008414.34169233IPR004088K Homology domain, type 1
CDDcd001055.75E-14171233No hitNo description
PfamPF000131.8E-11171235IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.0E-15271303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8272302IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.108272299IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-7272298IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8273297IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEYEGGRKRA RFDASFNGNG GFKKSRPEME SFTPGIRSKS KPCTKFFSTA GCPFGEGCHF  60
LHYVPGGLKT VSHLINVGGS PALPPSARNP VVPPSFPDGS SPPAVKTRLC NKFNSAEGCK  120
FGEKCHFAHG EWELGKPTLP SYEDHRGRMG GRMEPPPPSH GLAASFGASS TAKISVDSSL  180
AGAIIGKNGV NSKQICRATG AKLSIREHET DPNLRNIELE GTFDQIKQAS TMVRELIVNV  240
GSSMAANHTK SHHHGGGGGG GGTGHSSGSG SNFKTKICDN FTKGSCTFGE RCHFAHGAHE  300
LRKTGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875946.11e-166zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-109C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLW9QK761e-158W9QK76_9ROSA; Zinc finger CCCH domain-containing protein 14
STRINGXP_010087387.11e-158(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.16e-76C3H family protein