PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G042261.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

MYB

Protein Properties

Length: 1093aa MW: 113845 Da PI: 8.244

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G042261.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.2	3.9e-08	200	244	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed+ l+ av++ G g+W+ I r Rt+ q+ rw HL.SW.v1.0.G042261.1 200 RKPWSEAEDLELIAAVQKCGEGNWANILRGDFkGDRTASQLSQRW 244 789************************984223588888888888 PP
2	Myb_DNA-binding	25.2	3.9e-08	651	695	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W++ Ed+ l+ av++ G g+W+ I r Rt+ q+ rw HL.SW.v1.0.G042261.1 651 RKPWSEAEDLELIAAVQKCGEGNWANILRGDFkGDRTASQLSQRW 695 789************************984223588888888888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.771	195	252	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.8E-12	196	249	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.45E-11	197	249	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-9	199	250	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-6	200	244	IPR001005	SANT/Myb domain
CDD	cd11660	4.27E-13	201	249	No hit	No description
PROSITE profile	PS51294	13.653	646	703	IPR017930	Myb domain
SuperFamily	SSF46689	1.73E-11	648	700	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-12	648	700	IPR009057	Homeodomain-like
SMART	SM00717	7.2E-9	650	701	IPR001005	SANT/Myb domain
Pfam	PF00249	1.4E-6	651	695	IPR001005	SANT/Myb domain
CDD	cd11660	4.27E-13	652	700	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1093 aa Download sequence Send to blast
MVESSKKQTK GLISEEEIAT LLHRYSATTV LTLLHEVSNC SGFKIDWNAL AEKTSTGISN 60 ANEYQMLWRH LAYRQSLLET FEDGAGAQPM DDDSDLEYEL EAFPTISGEP LAEAAACVKV 120 LIASVSSSDS IPCGSTVEAP LTINIPNGQS SRALEQSSCS MQGTNIIVPV SVQKQPVPSA 180 TIADQDMNGL AGGNLQRRKR KPWSEAEDLE LIAAVQKCGE GNWANILRGD FKGDRTASQL 240 SQRWAIIRKR HGNLNLGGHS NGTQLSEAQL AARHAVSLAL NMPVKSLTAG ATTTNNSAVT 300 NSINSSVGTN GTKKSLITGA SETLMGVCGF LQSQKQAQEN LTSKTSPVGS LGPTAKPRLP 360 LKKPVLKSSP SSDAMVRATA VAAGARIASP SDAASLLKAA HAKNAVHIMP SGSGSIKATS 420 GMSTLSEGHP NVRYIRTGLA SAPISTYSAA TPSAPSIGSV KAIPPAVQHT PTINAQSDVS 480 SKQKNDVSYT PPVCEVPSKQ AVKTEEIAMS ELGPATKEQM QGDRACISSN SLGEAVKENK 540 VTSPDSKDGI NGTSRSLVSP VNVTSSLSDQ VLIASVSSSD SIPCGSTVEA PLTINIPNGQ 600 SSRALEQSSC SMQGTNITVP VLVQKQPVPS ATIADQDMTG LAGGNLHRRK RKPWSEAEDL 660 ELIAAVQKCG EGNWANILRG DFKGDRTASQ LSQRWAIIRK RHGNLNLGGQ SNGTQLSEAQ 720 LAARHAVSLA LNMPVKSLTA GATTTNNSAV KNSINSSVGT NGTKSSLITG ASETLTGVCG 780 FLQSQKQAQE NFTSKPSPVG SLGPTAKPRL PLKKPVLKSS PSSDAMVRAT AVAAGARIAS 840 PSDAASLLKA AHAKNAVHIM PSGSGSIKAT SGMSTLSDAH PNVHYIRTGL ASAPISTYSA 900 ATPSAPSIGS VKAIPPAVQH TPTINAQSDV SSKQKNDVSY TPPVCEVPSK QAVKTEEIAM 960 SELGPATKEQ MQGDRACISS NSLGEAVKEN KVTSPDSKDG INGTSRSLVS PVNVTSSLSD 1020 QVIADIQPKN RESEKDTEMM SSVAGAGKND DAVEEDGENQ NMHKMEEDPS VAKANACSEK 1080 LEIVCKEAGT KS*

Sequence ? help Back to Top

Protein Sequence Length: 1093 aa Download sequence Send to blast

MVESSKKQTK GLISEEEIAT LLHRYSATTV LTLLHEVSNC SGFKIDWNAL AEKTSTGISN  60
ANEYQMLWRH LAYRQSLLET FEDGAGAQPM DDDSDLEYEL EAFPTISGEP LAEAAACVKV  120
LIASVSSSDS IPCGSTVEAP LTINIPNGQS SRALEQSSCS MQGTNIIVPV SVQKQPVPSA  180
TIADQDMNGL AGGNLQRRKR KPWSEAEDLE LIAAVQKCGE GNWANILRGD FKGDRTASQL  240
SQRWAIIRKR HGNLNLGGHS NGTQLSEAQL AARHAVSLAL NMPVKSLTAG ATTTNNSAVT  300
NSINSSVGTN GTKKSLITGA SETLMGVCGF LQSQKQAQEN LTSKTSPVGS LGPTAKPRLP  360
LKKPVLKSSP SSDAMVRATA VAAGARIASP SDAASLLKAA HAKNAVHIMP SGSGSIKATS  420
GMSTLSEGHP NVRYIRTGLA SAPISTYSAA TPSAPSIGSV KAIPPAVQHT PTINAQSDVS  480
SKQKNDVSYT PPVCEVPSKQ AVKTEEIAMS ELGPATKEQM QGDRACISSN SLGEAVKENK  540
VTSPDSKDGI NGTSRSLVSP VNVTSSLSDQ VLIASVSSSD SIPCGSTVEA PLTINIPNGQ  600
SSRALEQSSC SMQGTNITVP VLVQKQPVPS ATIADQDMTG LAGGNLHRRK RKPWSEAEDL  660
ELIAAVQKCG EGNWANILRG DFKGDRTASQ LSQRWAIIRK RHGNLNLGGQ SNGTQLSEAQ  720
LAARHAVSLA LNMPVKSLTA GATTTNNSAV KNSINSSVGT NGTKSSLITG ASETLTGVCG  780
FLQSQKQAQE NFTSKPSPVG SLGPTAKPRL PLKKPVLKSS PSSDAMVRAT AVAAGARIAS  840
PSDAASLLKA AHAKNAVHIM PSGSGSIKAT SGMSTLSDAH PNVHYIRTGL ASAPISTYSA  900
ATPSAPSIGS VKAIPPAVQH TPTINAQSDV SSKQKNDVSY TPPVCEVPSK QAVKTEEIAM  960
SELGPATKEQ MQGDRACISS NSLGEAVKEN KVTSPDSKDG INGTSRSLVS PVNVTSSLSD  1020
QVIADIQPKN RESEKDTEMM SSVAGAGKND DAVEEDGENQ NMHKMEEDPS VAKANACSEK  1080
LEIVCKEAGT KS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010086659.1	0.0	uncharacterized protein LOC21386454 isoform X2
TrEMBL	A0A2P5F1D7	0.0	A0A2P5F1D7_TREOI; GAMYB transcription factor
STRING	XP_010086659.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3122	32	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	2e-74	MYB_related family protein