PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042745.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MYB
Protein Properties Length: 315aa    MW: 36170.5 Da    PI: 4.476
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042745.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.4e-131461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT eEd +l + +   G ++W+ +++  g+ R++k+c++rw +yl
  HL.SW.v1.0.G042745.1 14 RGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                          89******************************99************97 PP
2Myb_DNA-binding543.9e-1767110146
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                           rg +T+ E+ ++++++ +lG++ W++Ia++++ gRt++++k++w++
  HL.SW.v1.0.G042745.1  67 RGGFTEVEENQIIQLHSRLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                           788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-20564IPR009057Homeodomain-like
PROSITE profilePS5129413.535961IPR017930Myb domain
SuperFamilySSF466893.67E-2811108IPR009057Homeodomain-like
SMARTSM007176.3E-61363IPR001005SANT/Myb domain
PfamPF002497.6E-111461IPR001005SANT/Myb domain
CDDcd001672.63E-41661No hitNo description
PROSITE profilePS5129425.21762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2565116IPR009057Homeodomain-like
SMARTSM007173.0E-1666114IPR001005SANT/Myb domain
PfamPF002491.0E-1567110IPR001005SANT/Myb domain
CDDcd001673.84E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGRQPCCDKI GLKRGPWTIE EDHKLMNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGGF TEVEENQIIQ LHSRLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKRLKILG  120
LDPVTHQPIN QDQKKIISET TTTTTTTSND DHDQDQDQDQ DQDQDQDQDQ GQSKVEEETS  180
LDDQAAKSNN NTDNDDRQIS TSSDQEEVTA SAATTTTDET KYNDVLDNFD DELLEFQKLD  240
FSTWMDQEIN NSISGSSSSY STSSSLLSLD ESNNIINNPS LVEADQTYLD NSFFSWEVFN  300
YHHQLDQDLL FFKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-27121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023895144.11e-107myb-related protein 315
TrEMBLA0A2P5FBT31e-121A0A2P5FBT3_TREOI; MYB transcription factor
STRINGXP_010111643.11e-100(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.13e-85myb domain protein 40