PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042811.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 394aa    MW: 43632.6 Da    PI: 9.4005
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042811.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-19203251355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GVr+++ +g+WvAeIr p++   r+r++lg+f+ta+eAa a++ a+  l+g
  HL.SW.v1.0.G042811.1 203 FRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTADEAAMAYDTAAYMLRG 251
                           8******9.**********955...5**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.18E-31201260No hitNo description
SuperFamilySSF541712.81E-22202260IPR016177DNA-binding domain
PROSITE profilePS5103222.168202259IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.5E-31202261IPR001471AP2/ERF domain
SMARTSM003805.7E-34202265IPR001471AP2/ERF domain
PRINTSPR003671.5E-10203214IPR001471AP2/ERF domain
PfamPF008474.8E-13203251IPR001471AP2/ERF domain
PRINTSPR003671.5E-10225241IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDDHHHHQYP KMETFLSKGL MPSYFQGIST TGSSFFKDPN MLSSLTPTYY APEEDKNGVV  60
SRSGSESSNS SIEDKTTNTC SSKSLPFVPL NLFKALDPKL TGPQVSEPNS TLFDPPSSSS  120
PSFSSTDQQV QPGIEWLKMT QNFHHQSKGF SSYWLSTTKT QPMKNTGSPR RSSPSPSPSP  180
PSSSLEVSQN QNQKSTFSSV KLFRGVRQRH WGKWVAEIRL PRNRTRVWLG TFDTADEAAM  240
AYDTAAYMLR GDFAHLNFPD MKHQLKANSL NGSTAALLEA KLQAISNGIA PSSSNNNQLS  300
SPKKKKVSFK SSKATGLGQN QNQNGRKERE FIGLESKVGC DYHDHHQATM ASHETNTKRS  360
HELVVPDVDS VQLSRMPSLD MDIIWEALLV DHT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-19201259160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010107796.11e-120ethylene-responsive transcription factor ERF062
TrEMBLA0A2P5A6J81e-170A0A2P5A6J8_PARAD; AP2/ERF transcription factor
STRINGXP_010107796.11e-120(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101023141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.12e-50ERF family protein