PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G042964.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 384aa    MW: 41728.3 Da    PI: 8.0959
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G042964.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH331e-103255225
                          -S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                          +++ C ++++t tCk+Gd+CkF H
  HL.SW.v1.0.G042964.1 32 GEKDCVHYMQTRTCKFGDSCKFDH 55
                          7889******************** PP
2zf-CCCH24.74.2e-087089827
                          GGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  8 ffartGtCkyGdrCkFaHgp 27
                          +f +t  Ck+G rCkF+H++
  HL.SW.v1.0.G042964.1 70 YFVKTQRCKFGLRCKFNHPK 89
                          899***************96 PP
3zf-CCCH38.81.6e-12111135327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           +++C f+++tGtCk+G++C+F+H++
  HL.SW.v1.0.G042964.1 111 EPPCAFYLKTGTCKFGSTCRFNHPK 135
                           79*********************96 PP
4zf-CCCH36.67.6e-12187212126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           ++++ C+f+++tG CkyG +C+++H+
  HL.SW.v1.0.G042964.1 187 PGEPDCPFYLKTGSCKYGITCRYSHP 212
                           5789*********************9 PP
5zf-CCCH39.78.1e-13273294526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C+++++tG+Ck+G+rCkF+H+
  HL.SW.v1.0.G042964.1 273 ECDHYMKTGECKFGERCKFHHP 294
                           7********************8 PP
6zf-CCCH39.21.2e-12327349527
                           --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                           +C+++++tG CkyG++CkF H+p
  HL.SW.v1.0.G042964.1 327 ICPYYLKTGACKYGPTCKFDHPP 349
                           7********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0023057IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.1313058IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.28E-53156IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-83255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-43655IPR000571Zinc finger, CCCH-type
SMARTSM003560.346689IPR000571Zinc finger, CCCH-type
PROSITE profilePS501038.6247090IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-57089IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5108135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.183108136IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-10111135IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-6112136IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5113134IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.976186214IPR000571Zinc finger, CCCH-type
SMARTSM003564.1E-7186213IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-9188212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-5191213IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-4192212IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.328268296IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6268295IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-7269297IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10273294IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-5274294IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.258322350IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-7322349IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-6325349IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-6327347IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-10327349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MGQEAWYSAN ALAKRFRYES ASNLPIYPQR PGEKDCVHYM QTRTCKFGDS CKFDHAIWVP  60
EGGIPDWKEY FVKTQRCKFG LRCKFNHPKD NLAAVASGNG DLSSLPERPT EPPCAFYLKT  120
GTCKFGSTCR FNHPKDILLP SAGQENGSSQ YEAAKMEGAP GDSKPVKSSD PFTPALYYNT  180
KELPIRPGEP DCPFYLKTGS CKYGITCRYS HPDRNAINPP AAAIGHAIVA SPAAGLNIGV  240
VNPVASLYQT IDPRLAQMGV GPTVYPQRPG QMECDHYMKT GECKFGERCK FHHPIDRSAP  300
TLATIQAQQL SVKLTLAGLP RREGSIICPY YLKTGACKYG PTCKFDHPPP GEVMGMGGNA  360
QGTSTSGGEE AKGDEENGGE SIH*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818004e-58LN681800.1 Cucumis melo genomic scaffold, anchoredscaffold00017.
GenBankLN7132554e-58LN713255.1 Cucumis melo genomic chromosome, chr_1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024021124.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q31e-156C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2P5AP680.0A0A2P5AP68_TREOI; Zinc finger, CCCH-type
STRINGVIT_19s0085g01180.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75583345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-158floral homeotic protein (HUA1)