PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043014.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YC
Protein Properties Length: 143aa    MW: 16360.8 Da    PI: 8.5191
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043014.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC50.83.6e-167901496
                 NF-YC 14 tdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdiv 96
                          ++  + e+P  r+kki+k d+d+k++ aea  l+s + elf+  l+ rs   a e+kr+ +k   i aav+r + + dfl+d  
  HL.SW.v1.0.G043014.1  7 EETIRPEIPTGRVKKIMKLDKDIKKVNAEALFLISCSTELFLRFLAERSAEVAIEKKRKIVKLEHIRAAVKRHQpTSDFLLDSL 90
                          45556799***************************************************************976489****975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.7E-19577IPR009072Histone-fold
SuperFamilySSF471132.18E-17696IPR009072Histone-fold
PfamPF008084.6E-181376IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MMDEEKEETI RPEIPTGRVK KIMKLDKDIK KVNAEALFLI SCSTELFLRF LAERSAEVAI  60
EKKRKIVKLE HIRAAVKRHQ PTSDFLLDSL HLPPQRSDNQ PSDRNHSRNV AEKLVPVGTR  120
RIDDFFSKSA NENEAPIEIN ES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026035.15e-67DNA polymerase epsilon subunit C
TrEMBLA0A2P5BPF79e-69A0A2P5BPF7_PARAD; Nuclear transcription factor Y subunit C
TrEMBLA0A2P5EBH01e-68A0A2P5EBH0_TREOI; Nuclear transcription factor Y subunit C
STRINGPOPTR_0001s13970.11e-60(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111053139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43250.13e-42nuclear factor Y, subunit C13