PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G043118.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

C2H2

Protein Properties

Length: 215aa MW: 23538 Da PI: 9.0653

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G043118.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00038	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs+ L H +H HL.SW.v1.0.G043118.1 60 FECKTCNKRFSSFQALGGHRASH 82 89**********99999998887 PP
2	zf-C2H2	14.1	0.00014	112	134	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg +Fs L H+r+H HL.SW.v1.0.G043118.1 112 HVCTICGVVFSMGQALGGHMRRH 134 79********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.533	60	87	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	3.83E-6	60	134	No hit	No description
Pfam	PF13912	1.8E-12	60	84	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.093	60	82	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.286	112	139	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.9E-11	112	136	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.079	112	134	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MLMMMKKRMR EEADDETSRL NTSIANCLML LQSHNQIMTM NHNNNPSSVA VAATPSGHDF 60 ECKTCNKRFS SFQALGGHRA SHKKPKLAND GDHHDHHGHE DEYNKKVVNK KHVCTICGVV 120 FSMGQALGGH MRRHRAAMDN GVGFSSLLTA AAEEGGPVVV APRNPPLVAL KRSDSIRIKA 180 DSWLDLNLTP LENDLKILFG KMAPAPAVNS SFIF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097386.1	1e-48	zinc finger protein ZAT11
TrEMBL	A0A2P5DHR7	3e-65	A0A2P5DHR7_PARAD; TFIIH C1-like domain containing protein
STRING	XP_010097386.1	6e-48	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF316	34	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37430.1	8e-40	C2H2 family protein