PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043163.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 688aa    MW: 78087.4 Da    PI: 9.4639
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043163.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.63.1e-1518109299
                           EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           fk+   + +l+++ l +pk+f  ++ g+   +s +++l+ + g +Wev l  +k++g ++++ GW++F++   L+ g  +vF++dg s+
  HL.SW.v1.0.G043163.1  18 FKII-LEQTLENNKLQIPKTFWMKYcGSL--SSSQVILKLPCGSRWEVGL--TKSDGNVWIEMGWNKFAEHYSLNRGNLLVFRYDGISQ 101
                           4544.356778888*******99997433..4558***************..********************************99999 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v +f+k
  HL.SW.v1.0.G043163.1 102 F--TVIIFDK 109
                           9..9999987 PP
2B346.75.6e-15237318186
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                           f  ++++s+++ ++++ +p+ fae++ +kke+  + +l  ++g+sW+v +  +  +++  ++ GWk F+ +n L++gD++ F+ ++
  HL.SW.v1.0.G043163.1 237 FTVIMKSSYTTGRRNFHIPRWFAETYVKKKEC--EASLWVSNGKSWSVHY--QVIGRTAEFSYGWKAFALENSLEVGDICNFEQTN 318
                           556777888888899***********888777..79999999********..66666677999*******************9443 PP
3B3482.2e-15589682199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+ +l + +v+  + l +p + a+ + g+k++    t+     + W+vkl    + ++y l++GW  F+++n Lk +D+++F+l++r++
  HL.SW.v1.0.G043163.1 589 FIVALQSDHVHGGCKLPIPLTSASYYFGEKTQ---TTILWVGEEYWNVKL--IVNESEYKLSTGWAAFARENSLKPRDICIFELIKRDQ 672
                           5667777888999**********888777666...456677889******..777778******************************* PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                            e++v++fr+
  HL.SW.v1.0.G043163.1 673 PEMKVTIFRH 682
                           ********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2010110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-1911109IPR015300DNA-binding pseudobarrel domain
CDDcd100171.10E-1215108No hitNo description
PROSITE profilePS5086313.1416110IPR003340B3 DNA binding domain
SMARTSM010191.4E-817110IPR003340B3 DNA binding domain
PfamPF023622.8E-1118109IPR003340B3 DNA binding domain
SuperFamilySSF1019362.75E-21230330IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-21230332IPR015300DNA-binding pseudobarrel domain
CDDcd100172.21E-15235332No hitNo description
PROSITE profilePS5086312.703237334IPR003340B3 DNA binding domain
SMARTSM010192.5E-7237334IPR003340B3 DNA binding domain
PfamPF023623.3E-13237318IPR003340B3 DNA binding domain
SuperFamilySSF1019368.04E-15422504IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-13422505IPR015300DNA-binding pseudobarrel domain
CDDcd100172.97E-12424503No hitNo description
SMARTSM010193.4E-7426505IPR003340B3 DNA binding domain
PROSITE profilePS508638.727466505IPR003340B3 DNA binding domain
SuperFamilySSF1019367.26E-18586682IPR015300DNA-binding pseudobarrel domain
CDDcd100172.63E-15587681No hitNo description
Gene3DG3DSA:2.40.330.101.6E-18587682IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.787589683IPR003340B3 DNA binding domain
SMARTSM010198.4E-9589683IPR003340B3 DNA binding domain
PfamPF023623.8E-13589682IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MASTSQRAKV SPAPPHFFKI ILEQTLENNK LQIPKTFWMK YCGSLSSSQV ILKLPCGSRW  60
EVGLTKSDGN VWIEMGWNKF AEHYSLNRGN LLVFRYDGIS QFTVIIFDKT TTEIDYSSNP  120
SHFEKHVDTD EDDDVSIEVL DSTSWSPKTR EKSPLPCSRP LKKMRQSALG KAQSNPSHLR  180
SKVMQKGSLS SKVESGNTIG NITGLSTPKR YQKPSPVYSN TSALERVNYF QSEYPFFTVI  240
MKSSYTTGRR NFHIPRWFAE TYVKKKECEA SLWVSNGKSW SVHYQVIGRT AEFSYGWKAF  300
ALENSLEVGD ICNFEQTNNY GIEISFRVSI VKVDDDAYND LAAKISTNQS KRNVELDSSF  360
VGNDKASMIS QNTIEREKFG VADKSRKLIS EVNTGNRGTS YERPSSSVVW RTSEAANHSF  420
LENPSFQVAL RSAHVQGYKL SIPLDFARLY FKEKTQTMTL WVDYSFSAGW SVFARENSLQ  480
PRDVCIFELI KRNHPELKVS IIRQSAAKIA TTPSKQNVKL DSSFAGMISQ NIIEKKEQEK  540
VVVELSDKSP KLISESNTGN RDTNKRPSPS AVRTASEAAS HFFSIYPRFI VALQSDHVHG  600
GCKLPIPLTS ASYYFGEKTQ TTILWVGEEY WNVKLIVNES EYKLSTGWAA FARENSLKPR  660
DICIFELIKR DQPEMKVTIF RHDILYF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.13e-35B3 family protein