PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043164.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 509aa    MW: 57688.8 Da    PI: 9.4918
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043164.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.91e-1421112199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           ffk+ + ++ ++++ l +pk+f  ++ g+   s ++ l+ + g +Wev l  +k++g++++++GW++F++   L  g  +vF+++g+s+
  HL.SW.v1.0.G043164.1  21 FFKIILEENIGSTK-LQIPKTFWMKYCGS--LSSQVFLKLPCGSRWEVGL--TKSDGKVWIENGWEKFAQHCSLSFGHLLVFRYEGKSQ 104
                           78888888888887.*******9999545..4557***************..*********************************9999 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v +++k
  HL.SW.v1.0.G043164.1 105 F--NVIICDK 112
                           9..9999997 PP
2B351.61.7e-16228319191
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                           f+ +++ s+v+ +g +++p  fae++ +kke+  + +l  ++g+sW+v++++  r++  +  + +GWk F+++n L++gD++ F+l+++
  HL.SW.v1.0.G043164.1 228 FIVIMKASYVTGRGSFYIPAWFAETYINKKEC--EASLWISNGKSWSVYFKVrfRGGNTAAEFINGWKAFAHENSLEVGDICKFELTQN 314
                           78899*********************878777..6888888899999999664466666677779*********************988 PP

                           .SEE. CS
                    B3  88 .sefe 91 
                            ++ +
  HL.SW.v1.0.G043164.1 315 dNGIS 319
                           45444 PP
3B348.21.9e-15423506190
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f+ vl ps+v +++ l +p +fa+++ g+k++   ++      + W+vkl    + ++y++++GW  F+++n L+ +D+++F+l++r++
  HL.SW.v1.0.G043164.1 423 FQVVLQPSHVQRHK-LPIPLTFARHNFGEKAQ---IMTLCVGEEYWNVKL--LVYESEYTFSAGWALFARENSLQPRDVCIFELIKRNQ 505
                           77888888888887.*********99888777...666667889******..999999**************************98755 PP

                           E CS
                    B3  90 f 90 
                            
  HL.SW.v1.0.G043164.1 506 P 506
                           4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-2114113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-2015112IPR015300DNA-binding pseudobarrel domain
CDDcd100171.69E-1319111No hitNo description
PROSITE profilePS5086311.89920113IPR003340B3 DNA binding domain
PfamPF023621.1E-1121112IPR003340B3 DNA binding domain
SMARTSM010199.4E-921113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.3E-20221324IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-21221315IPR015300DNA-binding pseudobarrel domain
CDDcd100171.24E-18226326No hitNo description
PfamPF023625.6E-15228318IPR003340B3 DNA binding domain
SMARTSM010193.4E-8228328IPR003340B3 DNA binding domain
PROSITE profilePS5086313.338228328IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.2E-21415505IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.65E-20415503IPR015300DNA-binding pseudobarrel domain
CDDcd100172.00E-14421504No hitNo description
PROSITE profilePS5086311.533422509IPR003340B3 DNA binding domain
PfamPF023622.9E-12423506IPR003340B3 DNA binding domain
SMARTSM010198.3E-10423507IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MACASQRAKV QTNFSPMAPH FFKIILEENI GSTKLQIPKT FWMKYCGSLS SQVFLKLPCG  60
SRWEVGLTKS DGKVWIENGW EKFAQHCSLS FGHLLVFRYE GKSQFNVIIC DKTTVEIDYP  120
SNPNLIEKHV DTDDDVSIEV LDNVSWHPKT RVKSPLLPCS QPHKKMRRSA LGKVMQKGGL  180
SIKVESGDTI DNTTGLATPK RLQKLSSVYR NTTALERSIY FQSEYPFFIV IMKASYVTGR  240
GSFYIPAWFA ETYINKKECE ASLWISNGKS WSVYFKVRFR GGNTAAEFIN GWKAFAHENS  300
LEVGDICKFE LTQNDNGISF RVSCVKGDDD AYDYLAAKLA STSKQNVKHD SSFTSNDKVS  360
MISHNIFLKK EQEKNVVELS DKSRKLISEA KSGNRGTSKR PSSSVVSRVS EAGSHFSSKN  420
PSFQVVLQPS HVQRHKLPIP LTFARHNFGE KAQIMTLCVG EEYWNVKLLV YESEYTFSAG  480
WALFARENSL QPRDVCIFEL IKRNQPELK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-35B3 family protein