PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043490.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family NF-YB
Protein Properties Length: 149aa    MW: 16525.5 Da    PI: 5.4204
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043490.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB49.21.3e-158105597
                 NF-YB   5 drflPianvsrimkkvlPana.....kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 
                            ++lP a v r++k  l   a      + kda     e +  fi ++++ a+d c++ kr+ti+gdd+l al ++ f ++++pl++ l 
  HL.SW.v1.0.G043490.1   8 AEELPKAIVRRVVKDKLSHCAedtdfNVHKDALLAFSESARIFIHYLSATANDICKESKRQTISGDDVLKALEEIEFSEFLNPLNASLV 96 
                           5789***********998765223336999*********************************************************** PP

                 NF-YB  89 kyrelegek 97 
                           ++r+ ++ek
  HL.SW.v1.0.G043490.1  97 EFRKKKAEK 105
                           ***998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.0E-337141IPR009072Histone-fold
PfamPF008087.7E-111079IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471131.04E-2511130IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEKAVAEAEE LPKAIVRRVV KDKLSHCAED TDFNVHKDAL LAFSESARIF IHYLSATAND  60
ICKESKRQTI SGDDVLKALE EIEFSEFLNP LNASLVEFRK KKAEKKKGAS QTKDVKKKRK  120
LEEPSTDKNE GSESKQDEND AENGVGGD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100120KKAEKKKGASQTKDVKKKRKL
2104119KKKGASQTKDVKKKRK
3115120KKKRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010089818.11e-72DNA polymerase epsilon subunit 3
TrEMBLA0A2P5BHB91e-84A0A2P5BHB9_TREOI; Transcription initiation factor
STRINGXP_010089818.14e-72(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118633236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.13e-44nuclear factor Y, subunit B11