PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G043513.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Nin-like

Protein Properties

Length: 352aa MW: 40428 Da PI: 4.9882

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G043513.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	82.3	4.7e-26	176	226	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +k++s ++ls+y+++pi++AAkeL+v+lT+LK++CR++GI+RWPhRk+ sl HL.SW.v1.0.G043513.1 176 SKRLSRQVLSQYYYMPITQAAKELNVGLTLLKKRCRELGISRWPHRKLMSL 226 689*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.268	160	248	IPR003035	RWP-RK domain
Pfam	PF02042	1.7E-21	179	226	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MGSQGHVFTT SNFRPNHEMV AIDENPFPHI STDQYFSSSD FDNFFSSWEY NWQYDQYLPV 60 VQESYLLDPV PLMEYYPTNP LYSTAGLDPI IHDEFLSNNG NIGFGIWEDF GPLGFEPNSL 120 DEVNKEPFSV CSNIDSNYGD HGNGKDKTKK ERQMFKRSYR SSVVISEEKS SGTSSSKRLS 180 RQVLSQYYYM PITQAAKELN VGLTLLKKRC RELGISRWPH RKLMSLQTLI KNVQDLRNGE 240 SSEENDSRYK QYIELLEREK KLVEEVPNIE LNDGTKRLRQ ACFKNNYKKR KMRSTSGYDS 300 GLMSSKKYCS SDEMQGGAGM TNDLDEEDDE IKFLLSESFS STDLHLAIEI S*

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MGSQGHVFTT SNFRPNHEMV AIDENPFPHI STDQYFSSSD FDNFFSSWEY NWQYDQYLPV  60
VQESYLLDPV PLMEYYPTNP LYSTAGLDPI IHDEFLSNNG NIGFGIWEDF GPLGFEPNSL  120
DEVNKEPFSV CSNIDSNYGD HGNGKDKTKK ERQMFKRSYR SSVVISEEKS SGTSSSKRLS  180
RQVLSQYYYM PITQAAKELN VGLTLLKKRC RELGISRWPH RKLMSLQTLI KNVQDLRNGE  240
SSEENDSRYK QYIELLEREK KLVEEVPNIE LNDGTKRLRQ ACFKNNYKKR KMRSTSGYDS  300
GLMSSKKYCS SDEMQGGAGM TNDLDEEDDE IKFLLSESFS STDLHLAIEI S*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024018219.1	3e-80	protein RKD2
TrEMBL	A0A2P5F733	1e-111	A0A2P5F733_TREOI; RWP-RK domain containing protein
STRING	XP_010091523.1	3e-80	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6184	30	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66990.1	5e-40	RWP-RK domain-containing protein