PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043518.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family MIKC_MADS
Protein Properties Length: 186aa    MW: 21552.9 Da    PI: 10.9667
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043518.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.31.8e-27959151
                          S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                          krien + rqvtfskRrng+lKKA+ELS LCdaev ++ifs++gkly y+s
  HL.SW.v1.0.G043518.1  9 KRIENPTSRQVTFSKRRNGLLKKAFELSLLCDAEVGLVIFSPSGKLYQYAS 59
                          79***********************************************86 PP
2K-box78.31.9e-2682171998
                 K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                           + +++ e +++e++ +k+ +e+++ ++R+l GedL++L +keL+qLe+qL+ +++++RskK +++ e+i++l+++ ++l een++L+kk
  HL.SW.v1.0.G043518.1  82 QRSRTFEFWRTEIEEMKRSTETMEGNLRNLAGEDLSTLGMKELKQLERQLKIGIERVRSKKRRIVSEHINYLKRRRRALIEENTQLQKK 170
                           56677899********************************************************************************9 PP

                 K-box  98 l 98 
                           +
  HL.SW.v1.0.G043518.1 171 V 171
                           8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.085161IPR002100Transcription factor, MADS-box
SMARTSM004324.5E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-31275IPR002100Transcription factor, MADS-box
CDDcd002651.66E-37270No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-30323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004041.8E-303859IPR002100Transcription factor, MADS-box
PfamPF014861.9E-2286171IPR002487Transcription factor, K-box
PROSITE profilePS5129712.94587177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MGRGKVELKR IENPTSRQVT FSKRRNGLLK KAFELSLLCD AEVGLVIFSP SGKLYQYASH  60
DMDRSIVRYR SEMGLLGSAD NQRSRTFEFW RTEIEEMKRS TETMEGNLRN LAGEDLSTLG  120
MKELKQLERQ LKIGIERVRS KKRRIVSEHI NYLKRRRRAL IEENTQLQKK VSGSSRARIQ  180
ASIYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A3e-24169169MEF2 CHIMERA
6byy_B3e-24169169MEF2 CHIMERA
6byy_C3e-24169169MEF2 CHIMERA
6byy_D3e-24169169MEF2 CHIMERA
6bz1_A3e-24169169MEF2 CHIMERA
6bz1_B3e-24169169MEF2 CHIMERA
6bz1_C3e-24169169MEF2 CHIMERA
6bz1_D3e-24169169MEF2 CHIMERA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141157KRRIVSEHINYLKRRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024017888.12e-99agamous-like MADS-box protein AGL1
TrEMBLA0A2P5FDA01e-108A0A2P5FDA0_TREOI; MADS-box transcription factor
STRINGVIT_17s0000g01230.t016e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11933360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-48AGAMOUS-like 20