PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043618.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family B3
Protein Properties Length: 368aa    MW: 42088.7 Da    PI: 10.5341
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043618.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.22.6e-1285167182
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvF 82 
                           f  ++   +++ +++++lp kf+e++ +kke+  +++l  ++grsW v+l++   +  +++ +l+ GWk F+ +n L++  +v +
  HL.SW.v1.0.G043618.1  85 FTVTMRAVYTTGRCNFCLPYKFVEKYISKKEC--EVRLWVSDGRSWFVQLRMrqrNVLPRAELLSHGWKAFALDNSLRAVSIVKI 167
                           6667788899999*************888777..7***************775544445568999*************9877765 PP
2B348.81.2e-15270361399
                           EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                    B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                           +v ++s++   + l +p +f  ++ ++k++  t ++     + W vkl    +++ y +++GW  F+k n L+ +D+++F+l++r++ e
  HL.SW.v1.0.G043618.1 270 QVILRSNHVLGCVLHIPCTFGVHYFEEKTQ--T-VMLWVGEKYWYVKL--LAYKSDYKFSAGWAAFAKGNSLQPRDVCIFELIKRNQSE 353
                           4555777777899********999766555..4.4556789*******..999999*****************************9999 PP

                           .EEEEE-S CS
                    B3  92 lvvkvfrk 99 
                           ++v +fr+
  HL.SW.v1.0.G043618.1 354 MKVYIFRQ 361
                           ******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-1578165IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-1478161IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-1383161No hitNo description
PROSITE profilePS508639.2285182IPR003340B3 DNA binding domain
PfamPF023621.1E-985167IPR003340B3 DNA binding domain
SMARTSM010190.002985183IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.7E-21262362IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-20264362IPR015300DNA-binding pseudobarrel domain
CDDcd100175.40E-15267360No hitNo description
SMARTSM010192.7E-6268362IPR003340B3 DNA binding domain
PROSITE profilePS5086311.871268362IPR003340B3 DNA binding domain
PfamPF023621.5E-12269361IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
AANKRKATIP SNRKRKPSVK VGSSFTQNYD KTIMISQKLV IKKEQEKIKV EPSERSRSSK  60
VESCSTMKEQ ALERASCSQT KRPSFTVTMR AVYTTGRCNF CLPYKFVEKY ISKKECEVRL  120
WVSDGRSWFV QLRMRQRNVL PRAELLSHGW KAFALDNSLR AVSIVKIADD ACNKQVANKR  180
RTTTPSKRKR NPCVKVESSF NYDKANMIPQ NLIAKIEQEK IKVEPSNSFM KLISEANIGN  240
QGTCKRPSSS GLSRASEAAS QFFSKNPYFQ VILRSNHVLG CVLHIPCTFG VHYFEEKTQT  300
VMLWVGEKYW YVKLLAYKSD YKFSAGWAAF AKGNSLQPRD VCIFELIKRN QSEMKVYIFR  360
QSGLAQE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1525436034141B3 domain-containing transcription factor VRN1
4i1k_B3e-1525436034141B3 domain-containing transcription factor VRN1
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178189KRRTTTPSKRKR
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1754236
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.18e-19related to vernalization1 1