PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G043774.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C3H
Protein Properties Length: 323aa    MW: 36678.8 Da    PI: 6.8332
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G043774.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12185210126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           y   +C+++ +tG+C yGd+CkF+H+
  HL.SW.v1.0.G043774.1 185 YQPDICKDYKETGYCGYGDSCKFMHD 210
                           67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9182215IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7184211IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878184212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-12185215IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10185210IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.107.2E-13253309IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139202.4E-8261302No hitNo description
SuperFamilySSF578507.61E-13261305No hitNo description
SMARTSM001842.0E-4262299IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.453262300IPR001841Zinc finger, RING-type
CDDcd001622.69E-8262303No hitNo description
PROSITE patternPS005180277286IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MADSEEKAQA EQVCNFFRKA TKNKNIRKRT VTEDDEESNT DSTFLHSQKK APKSDNKLYF  60
SSGPSKITIP AESNVASDTP VFQFESSKEI QVQHDSRATA TLETETDFTR DARAIRERVL  120
KQAEEALKGK KKGAWDEKLY KGVNAYTDFK AGFRREQTVA SEKAGGSHGP LRASAHIRTS  180
TRFDYQPDIC KDYKETGYCG YGDSCKFMHD RGDYKSGWQM EKEWDDAEKI RKRNLALGEV  240
GDVDDGDESD EDDDENALPF ACFICRQPFV DPVVTKCKHY FCEHCALRHH TKNKKCFVCN  300
TPTLGIFNTA HEIRKRMAEE GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M2e-6395317113317RING finger protein 113A
5z58_M2e-6395317113317RING finger protein 113A
6ff4_t2e-6395317113317RING finger protein 113A
6ff7_t2e-6395317113317RING finger protein 113A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103154.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_024025696.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_024025697.10.0zinc finger CCCH domain-containing protein 1
RefseqXP_024025698.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-168C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLW9RK450.0W9RK45_9ROSA; Zinc finger CCCH domain-containing protein 1
STRINGXP_010103154.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-159C3H family protein