PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

HL.SW.v1.0.G044074.1

Organism

Humulus lupulus

Taxonomic ID

3486

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus

Family

Protein Properties

Length: 224aa MW: 25536.8 Da PI: 10.6059

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
HL.SW.v1.0.G044074.1	genome	HOPBASE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	55.9	7.8e-18	130	217	1	94
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k++++s+v+ +l lp +f++++ +k ++ ++tl de+g++++ + rk++ l++GWk+F a++L +gD ++F+l++ s HL.SW.v1.0.G044074.1 130 FVKTMLQSHVTGGFWLGLPVHFCKKNLSK--RDEMMTLIDEDGEEYKTVYLARKTG----LSGGWKGFSVAHDLVDGDALIFQLIRPSA 212 89*******************999655..5569***********656665....***********************9898 PP E..EE CS B3 90 felvv 94 f+ ++ HL.SW.v1.0.G044074.1 213 FKVFI 217 85544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.1E-20	122	220	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.39E-24	123	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.85E-24	128	217	No hit	No description
PROSITE profile	PS50863	12.421	130	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-15	130	217	IPR003340	B3 DNA binding domain
SMART	SM01019	4.8E-23	130	222	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 224 aa Download sequence Send to blast
MVMAKSKVSY EESRRKRLEE NKQRMEALNL TKLAQSLRNS SPLKLSPMKS VKKPRTVEKQ 60 VVVVRRSSRV ANMPVPVYKE VVIERVIIPR RTSKHRDLSN RVYASDDART NALERADKLL 120 SELEPEYPAF VKTMLQSHVT GGFWLGLPVH FCKKNLSKRD EMMTLIDEDG EEYKTVYLAR 180 KTGLSGGWKG FSVAHDLVDG DALIFQLIRP SAFKVFIMRV NSP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010092061.2	1e-122	B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	1e-78	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A2P5ASS8	1e-135	A0A2P5ASS8_PARAD; B3 DNA binding domain containing protein
STRING	XP_010092061.1	1e-118	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	4e-80	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]