PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044093.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LBD
Protein Properties Length: 248aa    MW: 27181.1 Da    PI: 4.422
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044093.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260120.96.9e-3871081101
                DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 
                           +C aCk+lrrkC+++C++apyf+ ++ +++fa+vhk+FGasnv+kll +lp + r+da+s++ +eA ar+rdP+yG+v+ i++lqqq++
  HL.SW.v1.0.G044093.1   7 SCGACKFLRRKCSSECIFAPYFCYDEaANNFAAVHKVFGASNVSKLLLHLPLHCRSDAASTISFEAVARMRDPIYGCVAQIFALQQQVA 95 
                           6***********************9878************************************************************* PP

                DUF260  89 qlkaelallkeel 101
                            l++e++ l++++
  HL.SW.v1.0.G044093.1  96 YLQEEIEILGNQI 108
                           *******998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.7726108IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-357104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MTGFGSSCGA CKFLRRKCSS ECIFAPYFCY DEAANNFAAV HKVFGASNVS KLLLHLPLHC  60
RSDAASTISF EAVARMRDPI YGCVAQIFAL QQQVAYLQEE IEILGNQIAH NATTGFASCG  120
SSSEGTVNNS NTTHNNNLDY ASQLFSHDGV LNSQYYQNQQ EILLSQNQNS TGNSSNQVVD  180
GQMGFQLRQN PCGWGDENMV CNSLSDPLEK LFQGIEQESF GNNPWLDEIP NMENFIGPQS  240
GTETILW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-3531027105LOB family transfactor Ramosa2.1
5ly0_B4e-3531027105LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010096608.11e-108LOB domain-containing protein 33
TrEMBLA0A2P5BAL01e-122A0A2P5BAL0_PARAD; Lateral organ boundaries domain containing protein
STRINGXP_010096608.11e-107(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91963242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06080.14e-54LOB domain-containing protein 33