PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044132.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 207aa    MW: 23253.2 Da    PI: 10.169
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044132.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.2e-18555155
                   AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                          ++++GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa a+++a+  + g
  HL.SW.v1.0.G044132.1  5 KKFRGVRRRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEDAAHAYDEAAILMSG 55
                          59*****998.**********8.....334*********************987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.35E-32564No hitNo description
PfamPF008475.3E-11653IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-32663IPR001471AP2/ERF domain
PROSITE profilePS5103221.838663IPR001471AP2/ERF domain
SMARTSM003809.3E-39669IPR001471AP2/ERF domain
SuperFamilySSF541713.99E-20664IPR016177DNA-binding domain
PRINTSPR003679.3E-10718IPR001471AP2/ERF domain
PRINTSPR003679.3E-102945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010143Biological Processcutin biosynthetic process
GO:0010166Biological Processwax metabolic process
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTRPKKFRGV RRRHWGSWVS EIRHPLLKRR VWLGTFETAE DAAHAYDEAA ILMSGRNAKT  60
NFPIKPNHQV YNNNRMAAAA TTSFSAILGE KLRKFSKTTP SPSLTCLRLD TENSHIGVWQ  120
KRAGSRSGSN WVMMVQLATA TNNNINNNNS KDHHHHQPLQ QVLVPGDDDQ VLVQPTRPEE  180
GGGTIGLDEE ERVALQMIEE LLNNNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-17567467ATERF1
3gcc_A6e-17567467ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis (PubMed:15070782, PubMed:15319479). Confers drought resistance (PubMed:15319479). Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:15070782, ECO:0000269|PubMed:15319479}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585631.17e-78ethylene-responsive transcription factor WIN1
RefseqXP_008792041.19e-78ethylene-responsive transcription factor WIN1-like
RefseqXP_028243751.17e-78ethylene-responsive transcription factor WIN1-like
SwissprotQ9XI331e-69WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A2P5BQ533e-98A0A2P5BQ53_PARAD; AP2/ERF transcription factor
STRINGGLYMA08G22590.13e-77(Glycine max)
STRINGXP_008792041.13e-77(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57633144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.11e-60ERF family protein
Publications ? help Back to Top
  1. Taketa S, et al.
    Barley grain with adhering hulls is controlled by an ERF family transcription factor gene regulating a lipid biosynthesis pathway.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(10): p. 4062-7
    [PMID:18316719]
  2. Al-Abdallat AM,Al-Debei HS,Ayad JY,Hasan S
    Over-expression of SlSHN1 gene improves drought tolerance by increasing cuticular wax accumulation in tomato.
    Int J Mol Sci, 2014. 15(11): p. 19499-515
    [PMID:25350113]
  3. Djemal R,Khoudi H
    Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum).
    Protoplasma, 2015. 252(6): p. 1461-73
    [PMID:25687296]
  4. Sadler C, et al.
    Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition.
    Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344
    [PMID:26965486]
  5. Sajeevan RS, et al.
    Expression of Arabidopsis SHN1 in Indian Mulberry (Morus indica L.) Increases Leaf Surface Wax Content and Reduces Post-harvest Water Loss.
    Front Plant Sci, 2017. 8: p. 418
    [PMID:28421085]