PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044551.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family Dof
Protein Properties Length: 320aa    MW: 33344.2 Da    PI: 10.0177
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044551.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.37.8e-3983142362
                zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                           e+alkcprC+s+ntkfCy+nnysl+qPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+++
  HL.SW.v1.0.G044551.1  83 ETALKCPRCESANTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRTK 142
                           7789*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-3366135IPR003851Zinc finger, Dof-type
PfamPF027012.4E-3285140IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.43286140IPR003851Zinc finger, Dof-type
PROSITE patternPS01361088124IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVFSSLPAYH HDPANWQQQP NHPNIITSSA GMSGGSQLLQ PSAPSPLPPP PPPPLPHGGG  60
GAGSIRPGSM ADRARMANIP MPETALKCPR CESANTKFCY FNNYSLTQPR HFCKTCRRYW  120
TRGGALRNVP VGGGCRRNKR TKGSGGSSKS PVSSSDRQTG SMTTSGSSGA VPSGNNNLNS  180
DILGLAHQVP PGLRFMTPLH HQLTHHHHDF AAATSDNLGF SYGGLNYGSM SAPMGGGADL  240
SFHIGSSALS GGGGGTGPSS LLTGFEQWRM QQPPQFPFMA SGLDPASAGL FESQGGDGPG  300
YQPRPKLSSS AITHQMASR*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00483DAPTransfer from AT5G02460Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018831327.11e-100PREDICTED: dof zinc finger protein DOF5.1-like
TrEMBLA0A2P5APR81e-111A0A2P5APR8_PARAD; Zinc finger, Dof-type
STRINGGorai.006G173700.11e-96(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-46DNA binding with one finger 2.4