PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044645.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family LFY
Protein Properties Length: 422aa    MW: 47269.6 Da    PI: 8.6939
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044645.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY605.79.1e-18513951386
               FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddl 89 
                           mdp++f+aslfkwdpr  +++  +++   + v++a+ +aaa+  ar+l +leelf+ayG+ry+tvakiaelGftv tL +m+deeldd+
  HL.SW.v1.0.G044645.1   1 MDPDTFTASLFKWDPRGLVSP--SSVGVPQLVPSAAYAAAAVRPARELGGLEELFHAYGIRYYTVAKIAELGFTVRTLANMRDEELDDM 87 
                           9***************98854..456667777888878889999999****************************************** PP

               FLO_LFY  90 mkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsede.etaldalsqeglseepvqeekeaagsggeglgeaelvaae 177
                           m+sls+ifr++llvGeryGikaavraerrrlee+ + ++rr   s+d+ ++ +d+lsqeglseepvq+eke++gsgg+g g+++++a++
  HL.SW.v1.0.G044645.1  88 MNSLSHIFRWELLVGERYGIKAAVRAERRRLEEDYDLSRRR---SADTpTNIIDSLSQEGLSEEPVQQEKEMVGSGGGG-GRWDQAAMT 172
                           *********************************88888888...45551569***********************9998.788887777 PP

               FLO_LFY 178 ekkseeekkkaskk.kqkrkkkkelkse........ededeeeeededeeg............sgedgeerqrehPfivtepgevargk 245
                            ++++++++++s+k  q+r       s+        +   +  e++                  g+ + erqrehPfivtepgevargk
  HL.SW.v1.0.G044645.1 173 VERRSKKQRRRSSKgAQRRVMAV--DSNihefvndmN---DAAEDEM---MmtttttmrtmsfLGRISCERQREHPFIVTEPGEVARGK 253
                           54444444444333133333332..233335653331...2222221...1223455556666666677******************** PP

               FLO_LFY 246 knGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvG 334
                           knGLDYLf+LyeqCr+fL+qvq+iakerG+kcPtkvtn+vfr+akkagas+inkPkmrhYvhCYalhcLdee snalrra+kergenvG
  HL.SW.v1.0.G044645.1 254 KNGLDYLFHLYEQCRDFLIQVQSIAKERGDKCPTKVTNEVFRFAKKAGASHINKPKMRHYVHCYALHCLDEEGSNALRRAYKERGENVG 342
                           ***************************************************************************************** PP

               FLO_LFY 335 awrqacykplvaiaarq.gwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                           awrqacykplvaiaarq +wdid++f++hprLsiWYvPtkLrqLCh+er++a+
  HL.SW.v1.0.G044645.1 343 AWRQACYKPLVAIAARQaAWDIDSIFSTHPRLSIWYVPTKLRQLCHAERNAAA 395
                           *************987637******************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016982.7E-1901394IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MDPDTFTASL FKWDPRGLVS PSSVGVPQLV PSAAYAAAAV RPARELGGLE ELFHAYGIRY  60
YTVAKIAELG FTVRTLANMR DEELDDMMNS LSHIFRWELL VGERYGIKAA VRAERRRLEE  120
DYDLSRRRSA DTPTNIIDSL SQEGLSEEPV QQEKEMVGSG GGGGRWDQAA MTVERRSKKQ  180
RRRSSKGAQR RVMAVDSNIH EFVNDMNDAA EDEMMMTTTT TMRTMSFLGR ISCERQREHP  240
FIVTEPGEVA RGKKNGLDYL FHLYEQCRDF LIQVQSIAKE RGDKCPTKVT NEVFRFAKKA  300
GASHINKPKM RHYVHCYALH CLDEEGSNAL RRAYKERGEN VGAWRQACYK PLVAIAARQA  360
AWDIDSIFST HPRLSIWYVP TKLRQLCHAE RNAAAATAST PSAPSTATAC SASAAAHLLP  420
F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1032344144183PROTEIN LEAFY
2vy2_A1e-1032344144183PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023902312.10.0floricaula/leafy homolog
SwissprotO040640.0FLLH_POPTR; Floricaula/leafy homolog
SwissprotO485590.0UNI_PEA; Protein UNIFOLIATA
TrEMBLA0A2P5FI560.0A0A2P5FI56_TREOI; Floricaula/leafy protein
STRINGXP_010105604.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-143floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]