PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G044907.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family C2H2
Protein Properties Length: 401aa    MW: 45505.2 Da    PI: 7.1959
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G044907.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-05233252120
                           EEETTTTEEESSHHHHHHHH CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                           ++Cp C k+F+r  n++ H+
  HL.SW.v1.0.G044907.1 233 FSCPLCFKTFNRYNNMQMHM 252
                           89*****************9 PP
2zf-C2H214.30.00012317339123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           + C +Cgk F  + + ++H +++
  HL.SW.v1.0.G044907.1 317 FMCRKCGKAFAVRGDWRTHEKNC 339
                           89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61233255IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66233260IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.4E-5233252IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280235255IPR007087Zinc finger, C2H2
SuperFamilySSF576672.43E-6300337No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5313337IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549317337IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808317337IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MSRDPYSNYL NGWLNLNQIH HHHNPHHHLN LLHHHHHNNN PYNFPSPYHD YLTNTSNYSN  60
NTTNICLFNI QNNNNTSLSS SPPSPPLKEA LPLLSLSPTR SPPHDLDLDL DHDHDKEEEK  120
KKKKKLEENS FLLSTSNNTT FDNNETVTVA LHLGLPNPIT STATATCSAD LISRLSSTEI  180
SDNKDRDEDQ DQEQEQDHVS SSSGYHSNRS SVLNKGQYWI PTPAQILIGP TQFSCPLCFK  240
TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTAMLRLPCF CCAPGCRNNI DHPRSRPLKD  300
FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG KLWYCTCGSD FKHKRSLKDH  360
IKAFGNGHAA YGVDCFDQDD DGDGDEGEGA SEVSTEQDNT *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118125EKKKKKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018807465.11e-161PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-128ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2P5EUJ70.0A0A2P5EUJ7_TREOI; TFIIH C1-like domain containing protein
STRINGXP_010102319.11e-159(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]