PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045222.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family WRKY
Protein Properties Length: 173aa    MW: 19707.8 Da    PI: 9.4389
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045222.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.26.9e-3393151159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDgy+WrKYGqK vk+s +prsYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+
  HL.SW.v1.0.G045222.1  93 LDDGYRWRKYGQKAVKNSAYPRSYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 151
                           59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.5E-3379151IPR003657WRKY domain
SuperFamilySSF1182901.29E-2886152IPR003657WRKY domain
PROSITE profilePS5081129.05788153IPR003657WRKY domain
SMARTSM007745.6E-3893152IPR003657WRKY domain
PfamPF031065.4E-2694151IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MNNSPNPNQE IDWISLFSGQ TGGITADEMT MNNSISCRSK TVLQNNSNNN NSEADGDHDQ  60
EDNQSNKRRA PGKTRKAARP RFAFQTRSAD DILDDGYRWR KYGQKAVKNS AYPRSYYRCT  120
HHTCNVKKQV QRLSKDTSIV VTTYEGIHNH PCEKLMETLT PLLRQMQFLS SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-2683150774Probable WRKY transcription factor 4
2lex_A9e-2683150774Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00539DAPTransfer from AT5G41570Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008354007.24e-75probable WRKY transcription factor 24
RefseqXP_010112967.22e-75probable WRKY transcription factor 43
SwissprotQ9FFS39e-57WRK24_ARATH; Probable WRKY transcription factor 24
TrEMBLA0A2P5D4142e-82A0A2P5D414_PARAD; WRKY domain containing protein
STRINGXP_010112967.13e-80(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32273471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41570.17e-59WRKY DNA-binding protein 24