PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID HL.SW.v1.0.G045355.1
Organism
Humulus lupulus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Humulus
Family ERF
Protein Properties Length: 301aa    MW: 32822.8 Da    PI: 4.5611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
HL.SW.v1.0.G045355.1genomeHOPBASEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.7e-18104153255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  HL.SW.v1.0.G045355.1 104 TYRGVRMRN-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 153
                           69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-12104153IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21104162IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-32104162IPR001471AP2/ERF domain
PROSITE profilePS5103223.288104161IPR001471AP2/ERF domain
SMARTSM003801.7E-37104167IPR001471AP2/ERF domain
PRINTSPR003672.6E-10105116IPR001471AP2/ERF domain
CDDcd000188.55E-33105163No hitNo description
PRINTSPR003672.6E-10127143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MAKEINIESD AQENLLGTTT ITTTTTTSSS SSSYSCSFES SSELSAGLYQ KYTKNADQDC  60
TIQNGTTKEV EGMKNGNNGS NEQQSKKRPR SSENGTNEEN KHPTYRGVRM RNWGKWVSEI  120
REPRKKSRIW LGTYPTAEMA ARAHDVAALA IKGASAYLNF PELRNDLPRP VSTTPKDIQA  180
AAAKAAAAFE GAKLLPCVTI DHDTHEAEAE AEAEAEPSRT QIPTSFSTTL SSTTTENGNT  240
QESTSSPSSA DNYEDTLFDL PDLFIGGTDS GTEFCYYSSS WHLCAADTGL RLEEPFLWEY  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1793165376Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00312DAPTransfer from AT2G44940Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015887656.12e-96ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ74e-72ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2P5EJ481e-134A0A2P5EJ48_TREOI; AP2/ERF domain containing protein
STRINGXP_008232393.12e-93(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-65ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]